LXL04_005532 | RubberDandelionOmics

Gene overview

LXL04_005532

Reference: OH-1004 Chr: Chr01 Coordinates: 167740707-167742539 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

636 bp · LXL04_005532|LXL04_005532|OH1004|cDNA

ATGGGACATATGATTTTTCTTATCTACATCAACATTGTTTACTTGTATTTAACAGGCCCGATCACTTTGAACAAAACAATTCCCACTTCTGAGGAGGCAATCTTCGACATAAATCCTTATAGATTGACAAAGTGGTTTGTGGATCATCCTAAATTTCTCAACAATCCATTCTATCTTGGTGGTGTATCCTACAATGGCATACTTGTGCCAATGATCGTCCATGAGATATATAACGGTAATGAAGCTGGAGAATATCCACA...

CDS

Download CDS FASTA

636 bp · LXL04_005532|LXL04_005532|OH1004|CDS

ATGGGACATATGATTTTTCTTATCTACATCAACATTGTTTACTTGTATTTAACAGGCCCGATCACTTTGAACAAAACAATTCCCACTTCTGAGGAGGCAATCTTCGACATAAATCCTTATAGATTGACAAAGTGGTTTGTGGATCATCCTAAATTTCTCAACAATCCATTCTATCTTGGTGGTGTATCCTACAATGGCATACTTGTGCCAATGATCGTCCATGAGATATATAACGGTAATGAAGCTGGAGAATATCCACA...

Protein

Download Protein FASTA

211 aa · LXL04_005532|LXL04_005532|OH1004|PROTEIN

MGHMIFLIYINIVYLYLTGPITLNKTIPTSEEAIFDINPYRLTKWFVDHPKFLNNPFYLGGVSYNGILVPMIVHEIYNGNEAGEYPQINIKGYFIGNPLIDIHDAYNSRVTFVHRVALISDAIYESTKENCHGEYFNVDPNNTLCLHDLQVVFKCLERINKENILDPICDTLDTFKNSHLFRRSLASFKDNWLLPQAQAQPCSVLCWVKDH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005532`
TK1151 ID	TkA01G036940
OH-1004 ID	LXL04_005532
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	83.500
Protein coverage (%)	TK1151 100.000 / OH-1004 98.578 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005532

Location Chr01:167740707-167742539 (-)

Description Similar to SCPL18: Serine carboxypeptidase-like 18

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g33540`	Probable carboxypeptidase.	No verified direct reference in this release
`At1g73280`	Probable carboxypeptidase.	No verified direct reference in this release
`At5g36180`	Probable carboxypeptidase.	No verified direct reference in this release
`At1g73300`	Probable carboxypeptidase.	No verified direct reference in this release
`At3g12203`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005532 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0019748 secondary metabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups Molecular Function

GO:0016752 sinapoyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G33540

ath:AT1G73280

ath:AT1G73300

ath:AT3G12203

ath:AT5G36180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.290

Rank 1 · LXL04_005532 · OH-1004

Extracellular0.266

Rank 2 · LXL04_005532 · OH-1004

Endoplasmic reticulum0.181

Rank 3 · LXL04_005532 · OH-1004

Cytoplasm0.156

Rank 4 · LXL04_005532 · OH-1004

Nucleus0.051

Rank 5 · LXL04_005532 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450.29Peptidase_S1036-177 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005532	`PF00450.29`	Peptidase_S10	36	177	2.5e-32	113.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7Z9`	Arabidopsis thaliana	Serine carboxypeptidase-like 18	40.331%	Swiss-Prot	moderate database homology
`Q9CAU1`	Arabidopsis thaliana	Serine carboxypeptidase-like 3	41.860%	Swiss-Prot	moderate database homology
`Q8RWJ6`	Arabidopsis thaliana	Serine carboxypeptidase-like 1	50.000%	Swiss-Prot	moderate database homology
`Q9CAU3`	Arabidopsis thaliana	Serine carboxypeptidase-like 2	42.353%	Swiss-Prot	moderate database homology
`Q9C7D6`	Arabidopsis thaliana	Serine carboxypeptidase-like 17	46.853%	Swiss-Prot	moderate database homology

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