Gene Card
Gene overview
cDNA / CDS / Protein Sequences
681 bp · LXL04_004843|LXL04_004843|OH1004|cDNA
ATGAAAGGCGTGAGAGGAATGTTCTTTGCGAAACTGAAATTCATTTCCACCATTACCACCGTGAAACAAGGTCTAGTTTTACCAACAATCATAAGTAGTGATATCAAGAATGAAGAAAATGGTCGAGCCCCCTTGAGCTTTGAAGAGATAGAGAAGAGTGTATCGGATTCGGTAGAATTTGAGGAGAAGTGTCCACCGGGTGGAAGTGATGCGGTCATTCTTTATACGACAAGCTTGAGAGGTATTCGTAAAACTTTTGA...
681 bp · LXL04_004843|LXL04_004843|OH1004|CDS
ATGAAAGGCGTGAGAGGAATGTTCTTTGCGAAACTGAAATTCATTTCCACCATTACCACCGTGAAACAAGGTCTAGTTTTACCAACAATCATAAGTAGTGATATCAAGAATGAAGAAAATGGTCGAGCCCCCTTGAGCTTTGAAGAGATAGAGAAGAGTGTATCGGATTCGGTAGAATTTGAGGAGAAGTGTCCACCGGGTGGAAGTGATGCGGTCATTCTTTATACGACAAGCTTGAGAGGTATTCGTAAAACTTTTGA...
Protein
Download Protein FASTA226 aa · LXL04_004843|LXL04_004843|OH1004|PROTEIN
MKGVRGMFFAKLKFISTITTVKQGLVLPTIISSDIKNEENGRAPLSFEEIEKSVSDSVEFEEKCPPGGSDAVILYTTSLRGIRKTFEDCNTIRFLLGSFGVSYDERDVSMHMEFREELWRTLGGRVIPPRLFIKGRHIGGVEEVVGLHEQGKLKDLLNGIPKSPTVGPCKGCGGIRFRVCFLCNGSRRVVSEKEADSDRDTDTDTLSSTSCVECNENGLVKCQVCF
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_004843 |
|---|---|
| TK1151 ID | TkA01G102150 |
| OH-1004 ID | LXL04_004843 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 99.400 |
| Protein coverage (%) | TK1151 86.598 / OH-1004 74.336Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_004843 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:148603064-148603744 (+) | |||||||||
| Description | Similar to At5g39865: Uncharacterized protein At5g39865 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000902 cell morphogenesis Biological Process GO:0006887 exocytosis Biological Process GO:0007009 plasma membrane organization Biological Process GO:0051592 response to calcium ion Biological Process GO:0070588 calcium ion transmembrane transport Biological Process GO:1905144 response to acetylcholine Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G28850 ath:AT5G39865 dme:Dmel_CG31559 hsa:389207 mmu:433899 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00462.31Glutaredoxin72-138 aaPF23733.3GRXCR1-2_C169-226 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_004843 | PF00462.31 | Glutaredoxin | 72 | 138 | 6.8e-14 | 52.5 |
| LXL04_004843 | PF23733.3 | GRXCR1-2_C | 169 | 226 | 8e-15 | 55.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.