Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1194 bp · LXL04_001853|LXL04_001853|OH1004|cDNA
ATGATTAATTATAGGCTATTGCATCAAGAAGCTTTGGTCATGTCAGGCAGGCCCCGAATTAGTCAAAGATCGAGCTTTTCTTCCTTTCCAATATTTTACTACTTCACAAAAGACTGCCTAACTAATATGTCTTGGAAGATATCCGAATTTCCTATATATAGGAAGCCAATCATTCTGCATTGTTCATATAACGTAATCAAACAAATTGACACTCTACAAAGGAGAGAAGAAGAAATTAATATCACAAGTATAAACAAAGA...
1194 bp · LXL04_001853|LXL04_001853|OH1004|CDS
ATGATTAATTATAGGCTATTGCATCAAGAAGCTTTGGTCATGTCAGGCAGGCCCCGAATTAGTCAAAGATCGAGCTTTTCTTCCTTTCCAATATTTTACTACTTCACAAAAGACTGCCTAACTAATATGTCTTGGAAGATATCCGAATTTCCTATATATAGGAAGCCAATCATTCTGCATTGTTCATATAACGTAATCAAACAAATTGACACTCTACAAAGGAGAGAAGAAGAAATTAATATCACAAGTATAAACAAAGA...
Protein
Download Protein FASTA397 aa · LXL04_001853|LXL04_001853|OH1004|PROTEIN
MINYRLLHQEALVMSGRPRISQRSSFSSFPIFYYFTKDCLTNMSWKISEFPIYRKPIILHCSYNVIKQIDTLQRREEEINITSINKEMENFPLINMAKLNGEERGATMEKIKDACENWGFFELVNHGISHELLDTVERVTKSHYKKSMEERFKEMVAEKALEGVTTEVNNMDWETTFFLRHLPTSNISEIPDLDDEYKKLMKDFAGKLEKLAEELLDLLCENLGLEKGYLKKAFNGSKGPNFGTKVSNYPPCPTPDLIKG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001853 |
|---|---|
| TK1151 ID | TkA01G503690 |
| OH-1004 ID | LXL04_001853 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 93.168 / OH-1004 37.783Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001853 |
|---|---|
| Location | Chr01:35066516-35068291 (-) |
| Description | Similar to ACO3: 1-aminocyclopropane-1-carboxylate oxidase 3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0002238 response to molecule of fungal origin Biological Process GO:0009693 ethylene biosynthetic process Biological Process GO:0009805 coumarin biosynthetic process Biological Process GO:0009835 fruit ripening Biological Process GO:0071398 cellular response to fatty acid Biological Process GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity Molecular Function GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function GO:0031418 L-ascorbic acid binding Molecular Function GO:0046872 metal ion binding Molecular Function |
| KEGG gene cross-reference | sly:544052 sly:544285 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF14226.13DIOX_N92-183 aaPF03171.272OG-FeII_Oxy246-340 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001853 | PF14226.13 | DIOX_N | 92 | 183 | 3e-16 | 60.8 |
| LXL04_001853 | PF03171.27 | 2OG-FeII_Oxy | 246 | 340 | 1.1e-33 | 116.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.