Gene Card
Gene overview
cDNA / CDS / Protein Sequences
468 bp · LXL04_000786|LXL04_000786|OH1004|cDNA
ATGGCGATGCAAACCTCTCACACCCAAGCACTGAAAGATATCGTACCAGCAGCAAGAAACAACATCAACACACAATTCATAGTTTTGGAAAAAGGAAGAATAACAACAGAAGGAGGTCAAAACAAGACATGTATGGGATTAGTTGCAGATGAAACTGCGTCTGTTCACTTTCAATTATGGAATGAAGAGTGTGATTCATTTCAAGCAGGAGACATTATTCATTTGTCAAATGGGATATTTTCTTATCATCATGGCAGTAA...
468 bp · LXL04_000786|LXL04_000786|OH1004|CDS
ATGGCGATGCAAACCTCTCACACCCAAGCACTGAAAGATATCGTACCAGCAGCAAGAAACAACATCAACACACAATTCATAGTTTTGGAAAAAGGAAGAATAACAACAGAAGGAGGTCAAAACAAGACATGTATGGGATTAGTTGCAGATGAAACTGCGTCTGTTCACTTTCAATTATGGAATGAAGAGTGTGATTCATTTCAAGCAGGAGACATTATTCATTTGTCAAATGGGATATTTTCTTATCATCATGGCAGTAA...
Protein
Download Protein FASTA155 aa · LXL04_000786|LXL04_000786|OH1004|PROTEIN
MAMQTSHTQALKDIVPAARNNINTQFIVLEKGRITTEGGQNKTCMGLVADETASVHFQLWNEECDSFQAGDIIHLSNGIFSYHHGSNLVLRAGKRGKVEKVGEFTMAFVESPNMSEILWLPDPNNSGKYVRESVISPFSRIFQCCKKRPRCFKLP
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_000786 |
|---|---|
| TK1151 ID | TkA01G588280 |
| OH-1004 ID | LXL04_000786 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 99.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_000786 |
|---|---|
| Location | Chr01:14387032-14387802 (+) |
| Description | Similar to DDB_G0279223: SOSS complex subunit B homolog |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006281 DNA repair Biological Process GO:0006974 DNA damage response Biological Process GO:0010212 response to ionizing radiation Biological Process GO:0044818 mitotic G2/M transition checkpoint Biological Process GO:0070200 establishment of protein localization to telomere Biological Process GO:1904355 positive regulation of telomere capping Biological Process GO:0000781 chromosome, telomeric region Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005694 chromosome Cellular Component GO:0005829 cytosol Cellular Component |
| KEGG gene cross-reference | bta:533842 ddi:DDB_G0279223 hsa:79035 mmu:69917 xla:446552 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.