LXL04_000750 | RubberDandelionOmics

Gene overview

LXL04_000750

Reference: OH-1004 Chr: Chr01 Coordinates: 13873064-13874529 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

711 bp · LXL04_000750|LXL04_000750|OH1004|cDNA

ATGAGCAGTCTCTCAAATGCTTTTTCTTCGCTAGAACTGGATGTTGAAGATGATAGGGAAGAGACAACCAATGCTGCTGATAACAAAGAGAAAACCAATGGGAACCATGAGAAAGAAACTGATAGTAAAGGCACTCGTCAAACCTATGAAGGAGACTACATGTTGCCTCTTGTGTGGATTGACTTGGAAATGACTGGATTGAATATTGAAGTAGATAGAATACTGGAGATTGCTTGTGTGATCACAGATGGGAAGTTGAC...

CDS

Download CDS FASTA

711 bp · LXL04_000750|LXL04_000750|OH1004|CDS

ATGAGCAGTCTCTCAAATGCTTTTTCTTCGCTAGAACTGGATGTTGAAGATGATAGGGAAGAGACAACCAATGCTGCTGATAACAAAGAGAAAACCAATGGGAACCATGAGAAAGAAACTGATAGTAAAGGCACTCGTCAAACCTATGAAGGAGACTACATGTTGCCTCTTGTGTGGATTGACTTGGAAATGACTGGATTGAATATTGAAGTAGATAGAATACTGGAGATTGCTTGTGTGATCACAGATGGGAAGTTGAC...

Protein

Download Protein FASTA

236 aa · LXL04_000750|LXL04_000750|OH1004|PROTEIN

MSSLSNAFSSLELDVEDDREETTNAADNKEKTNGNHEKETDSKGTRQTYEGDYMLPLVWIDLEMTGLNIEVDRILEIACVITDGKLTKSVEGPDLVINQTKECLEKMGEWCQDHHAASGLTERVIQSTTSEKEAEQQVIDFVKRHVGTYTPLLAGNSIYVDFLFLKKYMPDLASLFSHVVVDVSSVKALCLRWFPRDNKKAPRKENKHRAMDDIKESIAELKYYKDNVFKSQKPRK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000750`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000750

Location Chr01:13873064-13874529 (+)

Description Similar to At2g26970: Oligoribonuclease

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26970`	3'-to-5' exoribonuclease specific for small oligoribonucleotides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_000750 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006139 nucleobase-containing compound metabolic process Biological Process

GO:0009117 nucleotide metabolic process Biological Process

GO:2000827 mitochondrial RNA surveillance Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005758 mitochondrial intermembrane space Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0005925 focal adhesion Cellular Component

GO:0000175 3'-5'-RNA exonuclease activity Molecular Function

GO:0000287 magnesium ion binding Molecular Function

KEGG gene cross-reference

ath:AT2G26970

bta:540139

hsa:25996

mmu:104444

rno:300689

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.568

Rank 1 · LXL04_000750 · OH-1004

Nucleus0.472

Rank 2 · LXL04_000750 · OH-1004

Mitochondrion0.111

Rank 3 · LXL04_000750 · OH-1004

Cell membrane0.083

Rank 4 · LXL04_000750 · OH-1004

Endoplasmic reticulum0.067

Rank 5 · LXL04_000750 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00929.32RNase_T58-220 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000750	`PF00929.32`	RNase_T	58	220	4.4e-34	119.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVE0`	Arabidopsis thaliana	Oligoribonuclease	62.393%	Swiss-Prot	strong database homology

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