LXL04_000733 | RubberDandelionOmics

Gene overview

LXL04_000733

Reference: OH-1004 Chr: Chr01 Coordinates: 13616865-13622781 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2286 bp · LXL04_000733|LXL04_000733|OH1004|cDNA

ATGTCTTCTTCTTCTGGGGTAAACATTGAAAAGTATCTTATTCCACTAGATGAGATCAACCGTGTCACTGAAAACTTTAGTCGCAAAAGATATATTGGAGGCGGTGGATTTGGTCCTGTCTACAAAGGTCAACTCTCGGAATGTTGGCAAAACCAAATAGTTGCTGTCAAACGACTAGATGCGGACGGCCACCAAGGAGAGCGCGAGTTCCGCAACGAGATTGAGCTTATTTCCAGATTCCACCATGAAAACATCATCGC...

CDS

Download CDS FASTA

2286 bp · LXL04_000733|LXL04_000733|OH1004|CDS

ATGTCTTCTTCTTCTGGGGTAAACATTGAAAAGTATCTTATTCCACTAGATGAGATCAACCGTGTCACTGAAAACTTTAGTCGCAAAAGATATATTGGAGGCGGTGGATTTGGTCCTGTCTACAAAGGTCAACTCTCGGAATGTTGGCAAAACCAAATAGTTGCTGTCAAACGACTAGATGCGGACGGCCACCAAGGAGAGCGCGAGTTCCGCAACGAGATTGAGCTTATTTCCAGATTCCACCATGAAAACATCATCGC...

Protein

Download Protein FASTA

761 aa · LXL04_000733|LXL04_000733|OH1004|PROTEIN

MSSSSGVNIEKYLIPLDEINRVTENFSRKRYIGGGGFGPVYKGQLSECWQNQIVAVKRLDADGHQGEREFRNEIELISRFHHENIIAFIGYCDEGGEMIIVYEYALNGSLDHYLQDPNKISCITWVQRLEICIGAARGLHYLHSGLGEKHIVIHRDIKSANILLDGNMVAKICDFGLSKMGTRNQPDTRLYTKVAGTQFYLDPTYLESCILQKESDVYSFGVVLFEILSGTLVYRGISIGDKRQSLINTVRRYNKNEPEK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000733`
TK1151 ID	TkA01G590680
OH-1004 ID	LXL04_000733
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	86.800
Protein coverage (%)	TK1151 98.726 / OH-1004 40.736 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000733

Location Chr01:13616865-13622781 (+)

Description Similar to At5g59700: Probable receptor-like protein kinase At5g59700

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59700`	Probable receptor-like protein kinase At5g59700.	No verified direct reference in this release
`At3g46510`	Functions as an E3 ubiquitin ligase.	No verified direct reference in this release
`At3g46290`	Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.	Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000733 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0050777 negative regulation of immune response Biological Process

GO:2000028 regulation of photoperiodism, flowering Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G46290

ath:AT3G46510

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.576

Rank 1 · LXL04_000733 · OH-1004

Nucleus0.297

Rank 2 · LXL04_000733 · OH-1004

Cell membrane0.284

Rank 3 · LXL04_000733 · OH-1004

Mitochondrion0.045

Rank 4 · LXL04_000733 · OH-1004

Endoplasmic reticulum0.045

Rank 5 · LXL04_000733 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase27-300 aa

PF07714.24PK_Tyr_Ser-Thr29-300 aa

PF24768.2ARM_ARMC5349-552 aa

PF00514.30Arm350-389 aa

PF25598.2ARM_PUB403-595 aa

PF00514.30Arm436-469 aa

PF07714.24PK_Tyr_Ser-Thr636-747 aa

PF00069.32Pkinase647-752 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000733	`PF00069.32`	Pkinase	27	300	9.1e-70	235.8
LXL04_000733	`PF07714.24`	PK_Tyr_Ser-Thr	29	300	1.5e-65	221.8
LXL04_000733	`PF24768.2`	ARM_ARMC5	349	552	6e-12	46.3
LXL04_000733	`PF00514.30`	Arm	350	389	1.3e-26	92.4
LXL04_000733	`PF25598.2`	ARM_PUB	403	595	1.4e-22	81.2
LXL04_000733	`PF00514.30`	Arm	436	469	1.3e-26	92.4
LXL04_000733	`PF07714.24`	PK_Tyr_Ser-Thr	636	747	1.5e-65	221.8
LXL04_000733	`PF00069.32`	Pkinase	647	752	9.1e-70	235.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN92`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g59700	43.302%	Swiss-Prot	weak database homology
`Q9SNC6`	Arabidopsis thaliana	U-box domain-containing protein 13	44.444%	Swiss-Prot	weak database homology
`Q9LX66`	Arabidopsis thaliana	Receptor-like protein kinase HERK 1	41.716%	Swiss-Prot	weak database homology
`Q9FID9`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g38990	43.366%	Swiss-Prot	weak database homology
`Q9FID8`	Arabidopsis thaliana	Putative receptor-like protein kinase At5g39000	43.042%	Swiss-Prot	weak database homology

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