LXL04_000698 | RubberDandelionOmics

Gene overview

LXL04_000698

Reference: OH-1004 Chr: Chr01 Coordinates: 12856165-12858685 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1644 bp · LXL04_000698|LXL04_000698|OH1004|cDNA

ATGTATCAAGAAACGGGCTCCAAGTATAGTAATCTTAAGAAAAGAGCAAAGTCCGCATCAGGGAAACCTATCAATTCGTCCAGGGAAAAAACTAAAACCCTAGGGTTTAAGGAAAAGGGGTTTCGGGGAGATGATTGGAGAGGTCAAAGTAGAAGACCTAAAACTGATAGCGGTGCCTCTAATGTTGGAGACGAGAGATATACGAGAAAGAATGATAGCGGGAGGAATGGTAGTACGAAATCAAAGAACGACGATTTCCA...

CDS

Download CDS FASTA

1644 bp · LXL04_000698|LXL04_000698|OH1004|CDS

ATGTATCAAGAAACGGGCTCCAAGTATAGTAATCTTAAGAAAAGAGCAAAGTCCGCATCAGGGAAACCTATCAATTCGTCCAGGGAAAAAACTAAAACCCTAGGGTTTAAGGAAAAGGGGTTTCGGGGAGATGATTGGAGAGGTCAAAGTAGAAGACCTAAAACTGATAGCGGTGCCTCTAATGTTGGAGACGAGAGATATACGAGAAAGAATGATAGCGGGAGGAATGGTAGTACGAAATCAAAGAACGACGATTTCCA...

Protein

Download Protein FASTA

547 aa · LXL04_000698|LXL04_000698|OH1004|PROTEIN

MYQETGSKYSNLKKRAKSASGKPINSSREKTKTLGFKEKGFRGDDWRGQSRRPKTDSGASNVGDERYTRKNDSGRNGSTKSKNDDFHGHRSKRAERDRGSFHDDKSHNTDSRGRGMKSNYRGRTEGEGQTGRDYDRNKKRVYANNTTNGEAKFQKAPGAFLSKNRTFNKRESLDERKNGEHGENRNGFMRKNREEKYETSKQLHSKQTDVTEDHNFGKKNHQNKKNMTDDSVLMFDRPKRKRRLIRIEYPNDPANKRFDN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000698`
TK1151 ID	TkA01G593070
OH-1004 ID	LXL04_000698
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_000698`
Location	Chr01:12856165-12858685 (-)
Description	Similar to engB: Probable GTP-binding protein EngB (Ruegeria sp. (strain TM1040)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_000698` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0005829 cytosol Cellular Component GO:0005525 GTP binding Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	gox:GOX1828 rde:RD1_1453 rsp:RSP_1066 sil:SPO0530 sit:TM1040_0305 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.872

Rank 1 · LXL04_000698 · OH-1004

Cytoplasm0.141

Rank 2 · LXL04_000698 · OH-1004

Mitochondrion0.034

Rank 3 · LXL04_000698 · OH-1004

Cell membrane0.019

Rank 4 · LXL04_000698 · OH-1004

Endoplasmic reticulum0.010

Rank 5 · LXL04_000698 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01926.30MMR_HSR1372-490 aa

PF02421.25FeoB_N372-534 aa

PF00009.34GTP_EFTU445-539 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000698	`PF01926.30`	MMR_HSR1	372	490	2.1e-20	73.7
LXL04_000698	`PF02421.25`	FeoB_N	372	534	5.3e-06	26.8
LXL04_000698	`PF00009.34`	GTP_EFTU	445	539	6.1e-06	26.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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