Gene Card
Gene overview
cDNA / CDS / Protein Sequences
306 bp · LXL04_000545|LXL04_000545|OH1004|cDNA
ATGGAACACGGATCCTATCATGATTTATCAGCTTCAACAGTTGAGCTGAAAGATGAAGATCATACACTTGCAAACTCTCTCAGATTCACTCTTAATCAAGATCCAAGAGTTACACTCTGTGGGTACAGCATTCCTCATCCTTCAGAGGCTAAAGTAAACATAAGAGTCCAGACAACAGGTGATCCAGCAAAGGAAGTCTTGAAAGATTCATGCCAAGATCTCATGATGATATGTCAGCATGTTAGGAGCACTTTTGATCA...
306 bp · LXL04_000545|LXL04_000545|OH1004|CDS
ATGGAACACGGATCCTATCATGATTTATCAGCTTCAACAGTTGAGCTGAAAGATGAAGATCATACACTTGCAAACTCTCTCAGATTCACTCTTAATCAAGATCCAAGAGTTACACTCTGTGGGTACAGCATTCCTCATCCTTCAGAGGCTAAAGTAAACATAAGAGTCCAGACAACAGGTGATCCAGCAAAGGAAGTCTTGAAAGATTCATGCCAAGATCTCATGATGATATGTCAGCATGTTAGGAGCACTTTTGATCA...
Protein
Download Protein FASTA101 aa · LXL04_000545|LXL04_000545|OH1004|PROTEIN
MEHGSYHDLSASTVELKDEDHTLANSLRFTLNQDPRVTLCGYSIPHPSEAKVNIRVQTTGDPAKEVLKDSCQDLMMICQHVRSTFDQAVADFKNNQSSESE
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_000545 |
|---|---|
| TK1151 ID | TkA01G603210 |
| OH-1004 ID | LXL04_000545 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_000545 |
|---|---|
| Location | Chr01:10097159-10097656 (+) |
| Description | Similar to POLR1D: DNA-directed RNA polymerases I and III subunit RPAC2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006361 transcription initiation at RNA polymerase I promoter Biological Process GO:0006362 transcription elongation by RNA polymerase I Biological Process GO:0006363 termination of RNA polymerase I transcription Biological Process GO:0006383 transcription by RNA polymerase III Biological Process GO:0006384 transcription initiation at RNA polymerase III promoter Biological Process GO:0006386 termination of RNA polymerase III transcription Biological Process GO:0042254 ribosome biogenesis Biological Process GO:0042790 nucleolar large rRNA transcription by RNA polymerase I Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005666 RNA polymerase III complex Cellular Component GO:0005736 RNA polymerase I complex Cellular Component |
| KEGG gene cross-reference | bta:539061 dre:445412 hsa:51082 mmu:20018 xla:494863 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF13656.12RNA_pol_L_212-83 aaPF01193.30RNA_pol_L14-76 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_000545 | PF13656.12 | RNA_pol_L_2 | 12 | 83 | 6e-29 | 100.3 |
| LXL04_000545 | PF01193.30 | RNA_pol_L | 14 | 76 | 8.3e-10 | 39.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.