LXL04_000446 | RubberDandelionOmics

Gene overview

LXL04_000446

Reference: OH-1004 Chr: Chr01 Coordinates: 8327972-8329387 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

864 bp · LXL04_000446|LXL04_000446|OH1004|cDNA

ATGCATGGAAAGTCCAACTGGTCGTGGAAGTTTTCTTTTCTCGTTATACTCGGTTTACTAATTATTGTTCTAAAAGTAACTAAAGGCCTAGAAATGGAGGGAGAAGGAGGGATAATGGCACCAGGGTATAGATTCTACCCAACTGAAGAAGAGTTGGTCACATTctatttgaagcacaagatCCAAAAGAGTCCTGGCACCACAAGATTACTACAAGAAATCGATCGAGTCATTCCCCAATTTCATATTAATGATTTCTA...

CDS

Download CDS FASTA

864 bp · LXL04_000446|LXL04_000446|OH1004|CDS

ATGCATGGAAAGTCCAACTGGTCGTGGAAGTTTTCTTTTCTCGTTATACTCGGTTTACTAATTATTGTTCTAAAAGTAACTAAAGGCCTAGAAATGGAGGGAGAAGGAGGGATAATGGCACCAGGGTATAGATTCTACCCAACTGAAGAAGAGTTGGTCACATTCTATTTGAAGCACAAGATCCAAAAGAGTCCTGGCACCACAAGATTACTACAAGAAATCGATCGAGTCATTCCCCAATTTCATATTAATGATTTCTA...

Protein

Download Protein FASTA

287 aa · LXL04_000446|LXL04_000446|OH1004|PROTEIN

MHGKSNWSWKFSFLVILGLLIIVLKVTKGLEMEGEGGIMAPGYRFYPTEEELVTFYLKHKIQKSPGTTRLLQEIDRVIPQFHINDFYPWDLPQYAGERCRGDPEQWFFFVPRQENEARGGRISRLTSSGYWKATGSPSIVYSSGNRGIGVKRTMVFYTGRAPTGKKTKWKLNEYKAFEEQHSSNTNSIPELMQELSLCRVYIKSNCLRAFDRRPSGVVIRESRTLHQTHDNGLHATTSTHLIPPSIMGRTCDDHSYVSSE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000446`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_000446

Location Chr01:8327972-8329387 (-)

Description Similar to NAC090: NAC domain-containing protein 90

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22380`	NAC domain-containing protein 90.	No verified direct reference in this release
`At3g44350`	Putative NAC domain-containing protein 61.	No verified direct reference in this release
`At1g26870`	Promotes periclinal root capforming cell divisions.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0133000`	Transcription activator that binds sequence-specific DNA motifs.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000446 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009733 response to auxin Biological Process

GO:0045770 positive regulation of asymmetric cell division Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048103 somatic stem cell division Biological Process

GO:0048829 root cap development Biological Process

GO:1901002 positive regulation of response to salt stress Biological Process

GO:1902584 positive regulation of response to water deprivation Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

KEGG gene cross-reference

ath:AT1G26870

ath:AT5G22380

dosa:Os03g0133000

gmx:732555

osa:4331520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.870

Rank 1 · LXL04_000446 · OH-1004

Cytoplasm0.178

Rank 2 · LXL04_000446 · OH-1004

Cell membrane0.070

Rank 3 · LXL04_000446 · OH-1004

Endoplasmic reticulum0.051

Rank 4 · LXL04_000446 · OH-1004

Plastid0.017

Rank 5 · LXL04_000446 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02365.21NAM41-175 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000446	`PF02365.21`	NAM	41	175	8.4e-34	117.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FMR3`	Arabidopsis thaliana	NAC domain-containing protein 90	51.852%	Swiss-Prot	strong database homology
`Q9M290`	Arabidopsis thaliana	Putative NAC domain-containing protein 61	44.715%	Swiss-Prot	moderate database homology
`Q9ZVH0`	Arabidopsis thaliana	Protein FEZ	34.842%	Swiss-Prot	moderate database homology
`Q10S65`	Oryza sativa subsp. japonica	NAC domain-containing protein 22	39.086%	Swiss-Prot	moderate database homology

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