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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_000362
Reference: OH-1004 Chr: Chr01 Coordinates: 6618805-6621159 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2355 bp · LXL04_000362|LXL04_000362|OH1004|cDNA

ATGAAGAAGGTTTCATATCTGATTTACAAACCCAGATTCCATTATTTCTCAACATTGTCTCGCGTAACCGCGATCTCGAGCGAAGTATTAAACATCGTGCATTCAGTGGATCCGATGGAACCAGCACTCGAACAAGTAGTCCCATTCCTCTCGCCTGAAATCATAACATCCGTGCTCCAAGAACAACAAAGCCCATATCTTTGTTTCCGCTTTTTCGTCTGGGCAGCAAAAAGGAAGCAGTTTCGCAGCTGGGTTTCTCA...

CDS

Download CDS FASTA

2355 bp · LXL04_000362|LXL04_000362|OH1004|CDS

ATGAAGAAGGTTTCATATCTGATTTACAAACCCAGATTCCATTATTTCTCAACATTGTCTCGCGTAACCGCGATCTCGAGCGAAGTATTAAACATCGTGCATTCAGTGGATCCGATGGAACCAGCACTCGAACAAGTAGTCCCATTCCTCTCGCCTGAAATCATAACATCCGTGCTCCAAGAACAACAAAGCCCATATCTTTGTTTCCGCTTTTTCGTCTGGGCAGCAAAAAGGAAGCAGTTTCGCAGCTGGGTTTCTCA...

Protein

Download Protein FASTA

784 aa · LXL04_000362|LXL04_000362|OH1004|PROTEIN

MKKVSYLIYKPRFHYFSTLSRVTAISSEVLNIVHSVDPMEPALEQVVPFLSPEIITSVLQEQQSPYLCFRFFVWAAKRKQFRSWVSHNLMINLLVSDNSHMFDAYWKALEEIKSYGIRIPSDAFAVLIAGYWKTKNAEKAVESFGKMKHFDCEPNLFTYNLILHILVDKDMVRLASALYNLMLKLNFHLNCSTYTILIHGCCKSKKTSDALKLFDEMTQRGIPPSKLTYTVIISGLCQDKRVADAYQLFETMKTIGIKPD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_000362
TK1151 IDTkA01G617420
OH-1004 IDLXL04_000362
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)88.200
Protein coverage (%)TK1151 48.366 / OH-1004 41.071
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_000362
LocationChr01:6618805-6621159 (+)
DescriptionSimilar to At1g79540: Pentatricopeptide repeat-containing protein At1g79540
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g79540 Pentatricopeptide repeat-containing protein At1g79540. No verified direct reference in this release
At5g65560 Pentatricopeptide repeat-containing protein At5g65560. No verified direct reference in this release
At1g63080 Pentatricopeptide repeat-containing protein At1g63080, mitochondrial. No verified direct reference in this release
At1g62670 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial. No verified direct reference in this release
At1g62910 Pentatricopeptide repeat-containing protein At1g62910. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000362 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0006397 mRNA processing Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G79540
ath:AT5G65560
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.840
Rank 1 · LXL04_000362 · OH-1004
Plastid0.079
Rank 2 · LXL04_000362 · OH-1004
Nucleus0.052
Rank 3 · LXL04_000362 · OH-1004
Cytoplasm0.032
Rank 4 · LXL04_000362 · OH-1004
Cell membrane0.012
Rank 5 · LXL04_000362 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070.1MSC6_N96-214 aa
PF13812.13PPR_3109-168 aa
PF13041.13PPR_2124-165 aa
PF13041.13PPR_2154-203 aa
PF13762.13MNE1157-241 aa
PF23276.3TPR_24162-287 aa
PF17177.11PPR_long174-302 aa
PF13812.13PPR_3183-234 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_000362PF29070.1MSC6_N962141.7e-2590.7
LXL04_000362PF13812.13PPR_31091681.1e-54183.1
LXL04_000362PF13041.13PPR_21241651.9e-122400.0
LXL04_000362PF13041.13PPR_21542031.9e-122400.0
LXL04_000362PF13762.13MNE11572415.3e-0936.9
LXL04_000362PF23276.3TPR_241622872e-34119.1
LXL04_000362PF17177.11PPR_long1743022.7e-32112.6
LXL04_000362PF13812.13PPR_31832341.1e-54183.1
LXL04_000362PF12854.14PPR_11872182.7e-107350.8
LXL04_000362PF01535.27PPR1922225.5e-86277.7
LXL04_000362PF13041.13PPR_21932381.9e-122400.0
LXL04_000362PF29070.1MSC6_N2193151.7e-2590.7
LXL04_000362PF12854.14PPR_12202532.7e-107350.8
LXL04_000362PF13041.13PPR_22282731.9e-122400.0
LXL04_000362PF01535.27PPR2282575.5e-86277.7
LXL04_000362PF13812.13PPR_32483031.1e-54183.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SAJ5Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g7954047.019%Swiss-Protmoderate database homology
Q9LSL9Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g6556029.817%Swiss-Protweak database homology
Q9CAN5Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g63080, mitochondrial28.760%Swiss-Protweak database homology
Q9SXD1Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g62670, mitochondrial30.620%Swiss-Protmoderate database homology
Q9LQ16Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g6291028.219%Swiss-Protweak database homology

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