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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG098590
Reference: TK1151 Chr: ChrUn Coordinates: 27841685-27844412 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2439 bp · TkAUNG098590|TK1151|cDNA

ATGGTAAACAATGATCTTGTAAGTCTAGTAAACACCCCTAAAATCCTGGAAGGAAACTCTAGCTCTCCTATGCACTATAATTCAGTACATCTACGCCATACGATGTCATCTTCTCCTCTCCCTCCTGCCTTCTGTATCAACTCTTCTTTAACCTCCACTCATCGAGCACTCCATGCTTCTGCGTTACAACTACCTACACCATCCACCACATCTTCACACTCTTTATCCACAAAATATCATCTGCACCGGGATCCCCAACC...

CDS

Download CDS FASTA

2439 bp · TkAUNG098590|TK1151|CDS

ATGGTAAACAATGATCTTGTAAGTCTAGTAAACACCCCTAAAATCCTGGAAGGAAACTCTAGCTCTCCTATGCACTATAATTCAGTACATCTACGCCATACGATGTCATCTTCTCCTCTCCCTCCTGCCTTCTGTATCAACTCTTCTTTAACCTCCACTCATCGAGCACTCCATGCTTCTGCGTTACAACTACCTACACCATCCACCACATCTTCACACTCTTTATCCACAAAATATCATCTGCACCGGGATCCCCAACC...

Protein

Download Protein FASTA

812 aa · TkAUNG098590|TK1151|PROTEIN

MVNNDLVSLVNTPKILEGNSSSPMHYNSVHLRHTMSSSPLPPAFCINSSLTSTHRALHASALQLPTPSTTSSHSLSTKYHLHRDPQPKTIRYRLSQLCREGQPHLARQLFDEIPRPTTVVWNAIIIGLICNNMPHEAILLYSQMKSKSFYSDSYTYSSILKACAETKSLQIGKAVHCHILRSHLYPSKIVCNSLLNMYASCLYDGVKKVFHSLPKRNSISWNILISWYVKAGEFTEAVTHFLKLLKSGLNPTSVSFVNVF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG098590
TK1151 IDTkAUNG098590
OH-1004 IDLXL04_026085
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)34.100
Protein coverage (%)TK1151 86.207 / OH-1004 83.233
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG098590
LocationChrUn:27841685-27844412 (-)
DescriptionSimilar to PCMP-E36: Pentatricopeptide repeat-containing protein At4g21300
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g22150 Pentatricopeptide repeat-containing protein At3g22150, chloroplastic. No verified direct reference in this release
At3g63370 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At3g57430 Involved in RNA editing events in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472
At1g18485 Pentatricopeptide repeat-containing protein At1g18485. No verified direct reference in this release
At3g03580 Pentatricopeptide repeat-containing protein At3g03580. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026085 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G03580
ath:AT4G21300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.575
Rank 1 · TkAUNG098590 · TK1151
Plastid0.258
Rank 2 · TkAUNG098590 · TK1151
Nucleus0.053
Rank 3 · TkAUNG098590 · TK1151
Cytoplasm0.031
Rank 4 · TkAUNG098590 · TK1151
Cell membrane0.006
Rank 5 · TkAUNG098590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N62-234 aa
PF12743ESR1_C63-79 aa
PF13428TPR_1490-113 aa
PF13041PPR_295-113 aa
PF01535PPR95-113 aa
PF12854PPR_197-112 aa
PF23276TPR_2499-166 aa
PF22330Rib_mS39_PPR104-129 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG098590PF29070MSC6_N622343e-1350.4
TkAUNG098590PF12743ESR1_C63794.67.7
TkAUNG098590PF13428TPR_14901130.0005221.2
TkAUNG098590PF13041PPR_2951133e-67223.2
TkAUNG098590PF01535PPR951131.5e-61201.2
TkAUNG098590PF12854PPR_1971121e-33115.5
TkAUNG098590PF23276TPR_24991661.5e-0938.6
TkAUNG098590PF22330Rib_mS39_PPR1041290.03214.7
TkAUNG098590PF13812PPR_31151252.5e-1660.2
TkAUNG098590PF12921ATP131151470.0001222.6
TkAUNG098590PF13041PPR_21161643e-67223.2
TkAUNG098590PF12854PPR_11161451e-33115.5
TkAUNG098590PF01535PPR1191481.5e-61201.2
TkAUNG098590PF17177PPR_long1361684.2e-0627.0
TkAUNG098590PF13812PPR_31411982.5e-1660.2
TkAUNG098590PF12854PPR_11521621e-33115.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LIE7Arabidopsis thalianasp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150, chloroplastic55.000%Swiss-ProtHigh
Q9M1V3Arabidopsis thalianasp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370, chloroplastic31.500%Swiss-ProtMedium
Q7Y211Arabidopsis thalianasp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic31.800%Swiss-ProtMedium
Q0WN60Arabidopsis thalianasp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g1848529.700%Swiss-ProtLow
Q9SS60Arabidopsis thalianasp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g0358031.400%Swiss-ProtMedium

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