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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG098500
Reference: TK1151 Chr: ChrUn Coordinates: 27826170-27828047 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1278 bp · TkAUNG098500|TK1151|cDNA

ATGCCTCAAAGAGACGACGTATTATGGAACGTTATCCTCAATGGTTACTTAAAACACGGAATGAGCTCTGAAGCATTACAGACGTTTCGATACCTGCTTAATCACCAAATGAGACCTAATCCAGTCACACTCTCGAGTACCTTACCAGCTTGTGCGGGTTTAGCAAATCTCAAATTGGGGAAGGAGTTACACGGTCAAATTGTCAAGAACGGAGTTGAAAGGTGCCATGTGGGGACATCAATCATTGATATGTATGCGAA...

CDS

Download CDS FASTA

1278 bp · TkAUNG098500|TK1151|CDS

ATGCCTCAAAGAGACGACGTATTATGGAACGTTATCCTCAATGGTTACTTAAAACACGGAATGAGCTCTGAAGCATTACAGACGTTTCGATACCTGCTTAATCACCAAATGAGACCTAATCCAGTCACACTCTCGAGTACCTTACCAGCTTGTGCGGGTTTAGCAAATCTCAAATTGGGGAAGGAGTTACACGGTCAAATTGTCAAGAACGGAGTTGAAAGGTGCCATGTGGGGACATCAATCATTGATATGTATGCGAA...

Protein

Download Protein FASTA

425 aa · TkAUNG098500|TK1151|PROTEIN

MPQRDDVLWNVILNGYLKHGMSSEALQTFRYLLNHQMRPNPVTLSSTLPACAGLANLKLGKELHGQIVKNGVERCHVGTSIIDMYAKCGRIDLARQVFDKMSERDTVCWNSMITGFCQNGEPEKAIELFREMDVKYDSVTISSVLSACANLPLLSFGKAIHGIMIRGAMNNDLYAESALIDMYAKCGNLESARTVFDIMEKKSEVSWNSIISAYGNHGRLQQCLSLFHQMEGSGYLPDHVTFLAIISACDHSGLVDEGLG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG098500
TK1151 IDTkAUNG098500
OH-1004 IDLXL04_026085
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)96.500
Protein coverage (%)TK1151 99.765 / OH-1004 51.146
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG098500
LocationChrUn:27826170-27828047 (-)
DescriptionSimilar to PCMP-E36: Pentatricopeptide repeat-containing protein At4g21300
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g21300 Pentatricopeptide repeat-containing protein At4g21300. No verified direct reference in this release
At1g11290 Involved in multiple sites RNA editing events in chloroplasts.
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.2009 · DOI: 10.1105/tpc.108.064667
At3g13770 Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026085 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G03580
ath:AT4G21300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.625
Rank 1 · TkAUNG098500 · TK1151
Plastid0.201
Rank 2 · TkAUNG098500 · TK1151
Nucleus0.063
Rank 3 · TkAUNG098500 · TK1151
Cytoplasm0.035
Rank 4 · TkAUNG098500 · TK1151
Peroxisome0.007
Rank 5 · TkAUNG098500 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_25-52 aa
PF12854PPR_15-30 aa
PF24603TPR_305-101 aa
PF01535PPR7-31 aa
PF13428TPR_148-30 aa
PF13812PPR_39-51 aa
PF23276TPR_2411-46 aa
PF07719TPR_215-34 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG098500PF13041PPR_25525e-51171.3
TkAUNG098500PF12854PPR_15301.8e-36124.3
TkAUNG098500PF24603TPR_3051010.01916.1
TkAUNG098500PF01535PPR7313e-50165.7
TkAUNG098500PF13428TPR_148302.3e-0731.6
TkAUNG098500PF13812PPR_39514.5e-1556.2
TkAUNG098500PF23276TPR_2411461.1e-1558.5
TkAUNG098500PF07719TPR_215340.08413.7
TkAUNG098500PF00515TPR_116290.06513.8
TkAUNG098500PF29070MSC6_N211133.5e-0833.7
TkAUNG098500PF13041PPR_2791045e-51171.3
TkAUNG098500PF01535PPR791043e-50165.7
TkAUNG098500PF12854PPR_1791021.8e-36124.3
TkAUNG098500PF13812PPR_3791034.5e-1556.2
TkAUNG098500PF17177PPR_long791330.003117.6
TkAUNG098500PF12921ATP13791030.01316.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9STE1Arabidopsis thalianasp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g2130052.500%Swiss-ProtHigh
Q3E6Q1Arabidopsis thalianasp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290, chloroplastic40.300%Swiss-ProtMedium
Q9LIC3Arabidopsis thalianasp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial42.000%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399039.700%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial40.100%Swiss-ProtMedium

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