RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG098110
Reference: TK1151 Chr: ChrUn Coordinates: 27719521-27721625 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1271 bp · TkAUNG098110|TK1151|cDNA

GACAAAAAAAAGTATATTTATAAATTTCAAACGTTTCATGATTTATTCATTTCCATAGCTTTTCGCGTGTTCCTCCAATTTTTTTTCGCTCTTTCGTCGGAGCTTCAGTTCTCCTCCGGCCACGACCGACGACATTAGCTCCTCCACGTTCATTATTCCACTCGGATTCGTGTTGTAAGGTTTCCCCATCATGACGTCGCCTGAGTATGACTACCTGTTCAAGCTTTTGCTAATTGGAGATTCTGGAGTAGGAAAATCAT...

CDS

Download CDS FASTA

618 bp · TkAUNG098110|TK1151|CDS

ATGACGTCGCCTGAGTATGACTACCTGTTCAAGCTTTTGCTAATTGGAGATTCTGGAGTAGGAAAATCATGTCTACTTCTGAGGTTTGCTGACGATTCCTACTTGGATAGTTACATAAGCACCATTGGAGTTGATTTTAAAATCCGTACTGTGGAACAAGATGGCAAGACAATAAAACTTCAGATTTGGGACACAGCAGGGCAAGAACGTTTTAGGACAATTACAAGCAGCTACTATCGTGGGGCACATGGCATCATAGT...

Protein

Download Protein FASTA

205 aa · TkAUNG098110|TK1151|PROTEIN

MTSPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFKNVKQWLSEIDRYASENVNKLLVGNKCDLVQSKVVPTETAKAYADEIGIPFMEASAKEATNVEQAFMAMAASIKDRMASQPSMNKSRPPTVNIRGQPVQQSGGCCSSS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG098110
TK1151 IDTkAUNG098110
OH-1004 IDLXL04_022819
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)89.600
Protein coverage (%)TK1151 98.049 / OH-1004 99.505
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG098110
LocationChrUn:27719521-27721625 (-)
DescriptionSimilar to RABD2C: Ras-related protein RABD2c
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g02130 Protein transport.
A rab1 GTPase is required for transport between the endoplasmic reticulum and golgi apparatus and for normal golgi movement in plants.2000 · DOI: 10.1105/tpc.12.11.2201
Redistribution of membrane proteins between the Golgi apparatus and endoplasmic reticulum in plants is reversible and not dependent on cytoskeletal networks.2002 · DOI: 10.1046/j.0960-7412.2002.01252.x
At4g17530 Protein transport. No verified direct reference in this release
At5g47200 Protein transport. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0558600 Possesses GTPase activity. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022819 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process
GO:0009555 pollen development Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT1G02130
ath:AT4G17530
ath:AT5G47200
dosa:Os01g0558600
zma:542396
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.511
Rank 1 · TkAUNG098110 · TK1151
Golgi apparatus0.487
Rank 2 · TkAUNG098110 · TK1151
Cell membrane0.167
Rank 3 · TkAUNG098110 · TK1151
Lysosome / Vacuole0.160
Rank 4 · TkAUNG098110 · TK1151
Endoplasmic reticulum0.147
Rank 5 · TkAUNG098110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf10-130 aa
PF00735Septin10-67 aa
PF00071Ras11-171 aa
PF08477Roc11-125 aa
PF04670Gtr1_RagA11-131 aa
PF10662PduV-EutP11-61 aa
PF02421FeoB_N11-161 aa
PF00009GTP_EFTU12-26 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG098110PF00025Arf101301.2e-1661.3
TkAUNG098110PF00735Septin10670.1212.4
TkAUNG098110PF00071Ras111713.7e-68228.9
TkAUNG098110PF08477Roc111254.4e-37127.7
TkAUNG098110PF04670Gtr1_RagA111311.9e-0524.9
TkAUNG098110PF10662PduV-EutP11610.1312.8
TkAUNG098110PF02421FeoB_N111610.1712.1
TkAUNG098110PF00009GTP_EFTU12265.4e-0730.1
TkAUNG098110PF01926MMR_HSR1121232.7e-0524.9
TkAUNG098110PF09439SRPRB121453.1e-0524.1
TkAUNG098110PF00004AAA12880.0009920.3
TkAUNG098110PF13555AAA_2912260.09913.1
TkAUNG098110PF13191AAA_1612310.1213.7
TkAUNG098110PF13401AAA_2212320.2412.4
TkAUNG098110PF03193RsgA_GTPase13314.4e-0627.4
TkAUNG098110PF05147LANC_like16420.0512.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P28188Arabidopsis thalianasp|P28188|RAD2A_ARATH Ras-related protein RABD2a85.100%Swiss-ProtHigh
Q9SEH3Arabidopsis thalianasp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c86.600%Swiss-ProtHigh
Q9FPJ4Arabidopsis thalianasp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b85.600%Swiss-ProtHigh
P40392Oryza sativa subsp. japonicasp|P40392|RIC1_ORYSJ Ras-related protein RIC184.100%Swiss-ProtHigh

JBrowse

View in Genome Browser