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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG096660
Reference: TK1151 Chr: ChrUn Coordinates: 27319210-27321369 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2058 bp · TkAUNG096660|TK1151|cDNA

TTTAAGATTCCGGGTCGGTGGAGTAAACCGGGTCAAGTCATTTTAGGTTTTGGGGAACGATCTTGAATTACACGAAGCTCCTTCCTTTTCCCTTTCTCGGTTCCTCCTGCTCAGAAACAAAGATGCCTCGACCTTCTCCGCCGTTAATGGCGGCTCATCTTCGGATCCTACTCCGCCGTCGTTACTTCTCCACATCATTATCACCCCTGACGCCGCTGCAATCAATCCACCATTCTCTCCACCCCCATAAACCCTCACTC...

CDS

Download CDS FASTA

1569 bp · TkAUNG096660|TK1151|CDS

ATGCCTCGACCTTCTCCGCCGTTAATGGCGGCTCATCTTCGGATCCTACTCCGCCGTCGTTACTTCTCCACATCATTATCACCCCTGACGCCGCTGCAATCAATCCACCATTCTCTCCACCCCCATAAACCCTCACTCTCTAAACCCTACTCCCTTTGTACACCATTTTCACCTTTCTCTAAATTCTTCTCTTCCCAAACGGAAATCGAAACACCGGTTGAAGATTCACAAGACATTGCGAAATCTCTCTCGTATGAGCT...

Protein

Download Protein FASTA

522 aa · TkAUNG096660|TK1151|PROTEIN

MPRPSPPLMAAHLRILLRRRYFSTSLSPLTPLQSIHHSLHPHKPSLSKPYSLCTPFSPFSKFFSSQTEIETPVEDSQDIAKSLSYELLKDPNDQPIPLPHRLDLSFSHITLTSDIILATLNLSPESGRTALDFHKWVSTRTDFKLTDETLAYFIDYFGRRKDFKAAHELLIASKGISGIKTFESSIDRLVRAGRPTQVVSFFDKMESDYAFVRNMDSLKFIVSKLCEHGYASYAEKMVTNLANEFFPDEFICDTLIKGWC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG096660
TK1151 IDTkAUNG096660
OH-1004 IDLXL04_030572
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG096660
LocationChrUn:27319210-27321369 (-)
DescriptionSimilar to PNM1: Pentatricopeptide repeat-containing protein PNM1, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g60960 RNA-binding protein that functions in both mitochondrion and nucleus.
An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation.2011 · DOI: 10.1105/tpc.110.081638

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030572 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006417 regulation of translation Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003723 RNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G20300
ath:AT3G53700
ath:AT5G60960
ath:AT5G61370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.785
Rank 1 · TkAUNG096660 · TK1151
Plastid0.100
Rank 2 · TkAUNG096660 · TK1151
Nucleus0.073
Rank 3 · TkAUNG096660 · TK1151
Cytoplasm0.033
Rank 4 · TkAUNG096660 · TK1151
Cell membrane0.011
Rank 5 · TkAUNG096660 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13762MNE1113-155 aa
PF29070MSC6_N142-170 aa
PF13041PPR_2153-170 aa
PF01535PPR154-170 aa
PF23742VBS_C3G9179-213 aa
PF13041PPR_2181-207 aa
PF01535PPR186-207 aa
PF26398Cap2_linker187-236 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG096660PF13762MNE11131550.1213.1
TkAUNG096660PF29070MSC6_N1421701.7e-0938.0
TkAUNG096660PF13041PPR_21531706.8e-38129.3
TkAUNG096660PF01535PPR1541709.7e-2379.5
TkAUNG096660PF23742VBS_C3G91792130.0007620.3
TkAUNG096660PF13041PPR_21812076.8e-38129.3
TkAUNG096660PF01535PPR1862079.7e-2379.5
TkAUNG096660PF26398Cap2_linker1872360.1512.4
TkAUNG096660PF12854PPR_11922061.4e-2279.8
TkAUNG096660PF12854PPR_12212381.4e-2279.8
TkAUNG096660PF01535PPR2232379.7e-2379.5
TkAUNG096660PF23276TPR_242363512.3e-0525.0
TkAUNG096660PF12854PPR_12452751.4e-2279.8
TkAUNG096660PF13041PPR_22472966.8e-38129.3
TkAUNG096660PF13812PPR_32522922e-1660.5
TkAUNG096660PF01535PPR2532799.7e-2379.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FME4Arabidopsis thalianasp|Q9FME4|PP438_ARATH Small ribosomal subunit protein mL104 (rPPR9)54.700%Swiss-ProtHigh

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