TkAUNG096050 | RubberDandelionOmics

Gene overview

TkAUNG096050

Reference: TK1151 Chr: ChrUn Coordinates: 27163037-27165426 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1799 bp · TkAUNG096050|TK1151|cDNA

GGTAGGCCTGTGGAAATAATTTGATAGGTATTCTGCGATATTGCTCCGATAGAACAAACGGTCACCATACACTTCTTATTTACTGTTTTTAAGCGCCAAAAACGATGCTCCTCGCCGGAGTTCCTCTCGTCGGTGGAGACCAACTCCTCCTACACAGTAAGAGCCCAATATTACTCTTCCACACCTTCAAACCAATCGTAAATAGCCCCCTCATAGTTCGATCATCATCTTCAAGCCTGAAAGAACCTGACACTTCGTCG...

CDS

Download CDS FASTA

840 bp · TkAUNG096050|TK1151|CDS

ATGGGTTTAGGAACAGAGTACTTCAGGATATTACTTCAAAGTAACTGTGGTGTAAGTGTGCTGGATTTTGTCCCACGACCTGAAGGTGGATCTCCATATATATGTCTTAACCGATTAAATCAAACTCCAAGCTCGCCTATTTCTTCCGGAAGCTCTGCAGGCAGGAAAGCTAGTAAACGGATTGTACTTGTCTGCCATGGAAACTCTGAGGGTAATGATGCTAATGATACATCAATGGACATGCTTGGAACTATACAGTC...

Protein

Download Protein FASTA

279 aa · TkAUNG096050|TK1151|PROTEIN

MGLGTEYFRILLQSNCGVSVLDFVPRPEGGSPYICLNRLNQTPSSPISSGSSAGRKASKRIVLVCHGNSEGNDANDTSMDMLGTIQSQKTAELLLDLKVKSIVSSPRIAPTETANAIARVQEAADCLGADCVPRYVESKQMKDLDVSDILNRLKKESVNSSSLQSGWVNEFDDGLLTEIWDRSGTAWKSVLEELSNESEPENVVVAVSDPIVNIGLLGHCLRLTKEWMGSFHLDAGSISVIDFPDGTAGRGVVRCINYTA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG096050`
TK1151 ID	TkAUNG096050
OH-1004 ID	LXL04_032961
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 53.861 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG096050

Location ChrUn:27163037-27165426 (-)

Description Similar to At5g22620: Probable 2-carboxy-D-arabinitol-1-phosphatase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g22620`	Phosphoglycerate mutase-like protein lacking PGM activity, but having 2-carboxy-D-arabinitol 1-phosphate (CA1P) phosphatase activity.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032961 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006096 glycolytic process Biological Process

GO:0016311 dephosphorylation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0004619 phosphoglycerate mutase activity Molecular Function

GO:0016791 phosphatase activity Molecular Function

GO:0047538 2-carboxy-D-arabinitol-1-phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT5G22620

cko:CKO_03391

sbo:SBO_4458

sec:SCH_4430

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.604

Rank 1 · TkAUNG096050 · TK1151

Nucleus0.161

Rank 2 · TkAUNG096050 · TK1151

Mitochondrion0.140

Rank 3 · TkAUNG096050 · TK1151

Cytoplasm0.126

Rank 4 · TkAUNG096050 · TK1151

Cell membrane0.049

Rank 5 · TkAUNG096050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00300His_Phos_13-23 aa

PF00300His_Phos_161-247 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG096050	`PF00300`	His_Phos_1	3	23	4.7e-11	43.5
TkAUNG096050	`PF00300`	His_Phos_1	61	247	4.7e-11	43.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FNJ9`	Arabidopsis thaliana	sp\|Q9FNJ9\|CA1P_ARATH Probable 2-carboxy-D-arabinitol-1-phosphatase	58.400%	Swiss-Prot	High

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