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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG095950
Reference: TK1151 Chr: ChrUn Coordinates: 27142245-27142853 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

609 bp · TkAUNG095950|TK1151|cDNA

ATGATTAATCAAAACACGCGCCCTGACCCTGTGACATTCACGTCTGTGTTATCCGCATGTGCCCATTGTGGTTTTGTAAATGAAGCATGGAAGATATTCAAAACCATGTTACCTAAATACAATATTGAACCTTCAATGGAGCATTATGCATGCATGGTGGGAGTTTTATCTCGGGCTTTGAAGCTAAATGAAGCTGTGGATTTTATAAAGAAAATGCCTTTTGACCCTAATGAGAAAGTTTGGGGTGCATTGCTTCATGG...

CDS

Download CDS FASTA

609 bp · TkAUNG095950|TK1151|CDS

ATGATTAATCAAAACACGCGCCCTGACCCTGTGACATTCACGTCTGTGTTATCCGCATGTGCCCATTGTGGTTTTGTAAATGAAGCATGGAAGATATTCAAAACCATGTTACCTAAATACAATATTGAACCTTCAATGGAGCATTATGCATGCATGGTGGGAGTTTTATCTCGGGCTTTGAAGCTAAATGAAGCTGTGGATTTTATAAAGAAAATGCCTTTTGACCCTAATGAGAAAGTTTGGGGTGCATTGCTTCATGG...

Protein

Download Protein FASTA

202 aa · TkAUNG095950|TK1151|PROTEIN

MINQNTRPDPVTFTSVLSACAHCGFVNEAWKIFKTMLPKYNIEPSMEHYACMVGVLSRALKLNEAVDFIKKMPFDPNEKVWGALLHGASICNDVEIGRIAFNHLFQIEPENTGSYVIMANLYSRAGKWEEAEGVRVMLERFGLKKIPGCSWIETRSGMKCFVAKDLSDGKTDEMYCVLDGLVKMMREERYDVSEDFIEEGVC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG095950
TK1151 IDTkAUNG095950
OH-1004 IDLXL04_004930
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)88.100
Protein coverage (%)TK1151 100.000 / OH-1004 30.560
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG095950
LocationChrUn:27142245-27142853 (+)
DescriptionSimilar to PCMP-E49: Pentatricopeptide repeat-containing protein At2g37310
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g37310 Pentatricopeptide repeat-containing protein At2g37310. No verified direct reference in this release
At1g20230 Pentatricopeptide repeat-containing protein At1g20230. No verified direct reference in this release
At3g49142 Putative pentatricopeptide repeat-containing protein At3g49142. No verified direct reference in this release
At4g18750 Plays a major role in single RNA editing events in chloroplasts.
Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.2013 · DOI: 10.1074/jbc.m113.485755
At5g56310 Pentatricopeptide repeat-containing protein At5g56310. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004930 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0016556 mRNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G20230
ath:AT2G22410
ath:AT2G29760
ath:AT2G37310
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.642
Rank 1 · TkAUNG095950 · TK1151
Plastid0.172
Rank 2 · TkAUNG095950 · TK1151
Nucleus0.063
Rank 3 · TkAUNG095950 · TK1151
Cytoplasm0.041
Rank 4 · TkAUNG095950 · TK1151
Peroxisome0.007
Rank 5 · TkAUNG095950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N1-70 aa
PF13812PPR_32-55 aa
PF17177PPR_long3-72 aa
PF23276TPR_245-72 aa
PF12921ATP135-43 aa
PF13041PPR_28-45 aa
PF12854PPR_18-36 aa
PF01535PPR11-36 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG095950PF29070MSC6_N1700.2910.9
TkAUNG095950PF13812PPR_32550.0006920.4
TkAUNG095950PF17177PPR_long3720.003217.6
TkAUNG095950PF23276TPR_245720.1812.4
TkAUNG095950PF12921ATP135430.2611.9
TkAUNG095950PF13041PPR_28451.1e-0939.0
TkAUNG095950PF12854PPR_18361e-0732.3
TkAUNG095950PF01535PPR11361.6e-1350.6
TkAUNG095950PF12854PPR_141721e-0732.3
TkAUNG095950PF13041PPR_248791.1e-0939.0
TkAUNG095950PF01535PPR49721.6e-1350.6
TkAUNG095950PF12921ATP1357950.2611.9
TkAUNG095950PF13041PPR_276951.1e-0939.0
TkAUNG095950PF01535PPR81951.6e-1350.6
TkAUNG095950PF20431E_motif921531.7e-2176.9
TkAUNG095950PF13431TPR_171011320.03515.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUT5Arabidopsis thalianasp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g3731054.100%Swiss-ProtHigh
Q9LNU6Arabidopsis thalianasp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g2023043.400%Swiss-ProtMedium
P0C899Arabidopsis thalianasp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g4914244.300%Swiss-ProtMedium
Q9SN39Arabidopsis thalianasp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic41.400%Swiss-ProtMedium
Q9FMA1Arabidopsis thalianasp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g5631040.400%Swiss-ProtMedium

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