TkAUNG095940 | RubberDandelionOmics

Gene overview

TkAUNG095940

Reference: TK1151 Chr: ChrUn Coordinates: 27132729-27140456 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

6898 bp · TkAUNG095940|TK1151|cDNA

CCGCGACCGATTTTTTTCCTCCCAAGGGCGATTTCCGGCGAGAAAAGGATTAGTTCTCCGACGTCTTCCGGCCAACCCTACTCCTTCGACGCGACCTTCCTCCGACGCACAGCTTCTTCCTCCGTCGTCGTTTCTCTGTCCCGCGTCTTCTTTCGGCCTGGTTCTTAACTCCAGCTTGTTCTCCGGCGGACTGCTATATGTTTGATTTGGTCTGAACTTCCGGTCTCCAAACCCCATTATCTTCAGCAACTGTCGCAGTC...

CDS

Download CDS FASTA

3276 bp · TkAUNG095940|TK1151|CDS

ATGTGGGATCCCGCGGCGTTTTGTCGAAAAGATATTACGTGTTTTGAAAACGCTATAATTGTCGAAGGCGTTTGGATATTTTCTAAGTTTCAATGTTATATGGTGAACGTGTATGCTTCGCAACAAGATAGTCAGAAACGGGAGCTTTGGGATCGGATCCATGGGTTTATGGAGTCACATCCGGGGGAGTATATTTGCTTTGGTGACTTCAATGCCGTGCGAAATGCAAATGAGCGATGGGGTTGCGATTTTCATCAACG...

Protein

Download Protein FASTA

1091 aa · TkAUNG095940|TK1151|PROTEIN

MWDPAAFCRKDITCFENAIIVEGVWIFSKFQCYMVNVYASQQDSQKRELWDRIHGFMESHPGEYICFGDFNAVRNANERWGCDFHQREADDFNQFITENGIVDVPMGAFAFTRISTNGEKISKLDRFLITEGVIDRFPDLICTALSNTISDHRPICLRDMVIDFGPRPFRFFNLWMSEPTFEGMMKSSWGQPLESDGGCRAILLKNKLKRLKEDVKKWWHAIKANREGEKKVLDDKLKEIDGLLDQGNGNMEVIAERNVI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG095940`
TK1151 ID	TkAUNG095940
OH-1004 ID	LXL04_006431
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	91.200
Protein coverage (%)	TK1151 100.000 / OH-1004 48.111 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkAUNG095940`
Location	ChrUn:27132729-27140456 (-)
Description	Similar to LINE-1 reverse transcriptase homolog
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_006431` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0032197 retrotransposition Biological Process GO:0090304 nucleic acid metabolic process Biological Process GO:0003676 nucleic acid binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003824 catalytic activity Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0004523 RNA-DNA hybrid ribonuclease activity Molecular Function GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function GO:0016787 hydrolase activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.646

Rank 1 · TkAUNG095940 · TK1151

Nucleus0.289

Rank 2 · TkAUNG095940 · TK1151

Cell membrane0.130

Rank 3 · TkAUNG095940 · TK1151

Lysosome / Vacuole0.041

Rank 4 · TkAUNG095940 · TK1151

Endoplasmic reticulum0.041

Rank 5 · TkAUNG095940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03372Exo_endo_phos23-152 aa

PF14529Exo_endo_phos_233-156 aa

PF00078RVT_1433-687 aa

PF13966zf-RVT859-908 aa

PF03372Exo_endo_phos909-938 aa

PF13966zf-RVT975-1043 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG095940	`PF03372`	Exo_endo_phos	23	152	0.03	14.8
TkAUNG095940	`PF14529`	Exo_endo_phos_2	33	156	2.4e-08	34.6
TkAUNG095940	`PF00078`	RVT_1	433	687	2.1e-30	106.8
TkAUNG095940	`PF13966`	zf-RVT	859	908	1e-13	52.5
TkAUNG095940	`PF03372`	Exo_endo_phos	909	938	0.03	14.8
TkAUNG095940	`PF13966`	zf-RVT	975	1043	1e-13	52.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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