TkAUNG092600 | RubberDandelionOmics

Gene overview

TkAUNG092600

Reference: TK1151 Chr: ChrUn Coordinates: 26244624-26253419 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1886 bp · TkAUNG092600|TK1151|cDNA

AAATATTCTAATAACCCTTTAACCAATTCAATAAAAAACTTATTGAATTCAAATCCAAATTCGCTTTTGTTCCAACATCCGCCAGGATACTTCAATGATTATCAACTGCCTTATATGATATAAAGAGAAAGAAAAGTAGACACAAACATAAGAAAGAACCTCATAGTGTTTAACAATTCAGAGGAAATGGGGTTTTTGTCGTTGTTTGAGGTGGCATCGATGCCAATATTGGAGGTCTTGTTAGTGAGTTCAATAGGAGC...

CDS

Download CDS FASTA

1260 bp · TkAUNG092600|TK1151|CDS

ATGGGGTTTTTGTCGTTGTTTGAGGTGGCATCGATGCCAATATTGGAGGTCTTGTTAGTGAGTTCAATAGGAGCAATTATGGCCACCGATTACTTCAATATTCTCTCGGCAGATACTCGAAAATCATTAAATAAGATTGTTTTTGTGGCGTTTACTCCCGCACTAATTTTTGCTAGTCTTGCAAAGACCGTCACCCTCGAAGACATCATCTCATGGTGGTTTATGCCAATAAACATTGGGATAACATTTCTTTGTGGGGG...

Protein

Download Protein FASTA

419 aa · TkAUNG092600|TK1151|PROTEIN

MGFLSLFEVASMPILEVLLVSSIGAIMATDYFNILSADTRKSLNKIVFVAFTPALIFASLAKTVTLEDIISWWFMPINIGITFLCGGILGWIAAKIIKPKPHLEGLLIAMCSSGNLGNILLIIVPAICTEGGSPFGEHSTCKSKGLSYSSFSMALASFYIWTYTFQLIRSSSSKYTKEVEELPQEPNKDSDANTKTHLLNGKSQEYIDVVVPPLSYPTSDDTQIEPVSLQSVKNEKNNESFSSKLADILHIVMEKLMAPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG092600`
TK1151 ID	TkAUNG092600
OH-1004 ID	LXL04_013910
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.900
Protein coverage (%)	TK1151 100.000 / OH-1004 95.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG092600

Location ChrUn:26244624-26253419 (-)

Description Similar to PILS7: Protein PIN-LIKES 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65980`	Involved in cellular auxin homeostasis by regulating auxin metabolism.	No verified direct reference in this release
`At2g17500`	Involved in cellular auxin homeostasis by regulating auxin metabolism.	No verified direct reference in this release
`At1g76520`	Involved in cellular auxin homeostasis by regulating auxin metabolism.	No verified direct reference in this release
`At1g20925`	Involved in cellular auxin homeostasis by regulating auxin metabolism.	No verified direct reference in this release
`At1g76530`	Involved in cellular auxin homeostasis by regulating auxin metabolism.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013910 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009651 response to salt stress Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0010311 lateral root formation Biological Process

GO:0040009 regulation of growth rate Biological Process

GO:0080162 endoplasmic reticulum to cytosol auxin transport Biological Process

GO:0140964 intracellular auxin homeostasis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G20925

ath:AT1G76520

ath:AT1G76530

ath:AT2G17500

ath:AT5G65980

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.384

Rank 1 · TkAUNG092600 · TK1151

Endoplasmic reticulum0.264

Rank 2 · TkAUNG092600 · TK1151

Lysosome / Vacuole0.185

Rank 3 · TkAUNG092600 · TK1151

Golgi apparatus0.090

Rank 4 · TkAUNG092600 · TK1151

Cytoplasm0.083

Rank 5 · TkAUNG092600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03547Mem_trans10-409 aa

PF13273DUF406459-108 aa

PF13273DUF4064156-191 aa

PF13273DUF4064235-271 aa

PF13273DUF4064325-406 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG092600	`PF03547`	Mem_trans	10	409	2.6e-81	273.7
TkAUNG092600	`PF13273`	DUF4064	59	108	0.62	11.0
TkAUNG092600	`PF13273`	DUF4064	156	191	0.62	11.0
TkAUNG092600	`PF13273`	DUF4064	235	271	0.62	11.0
TkAUNG092600	`PF13273`	DUF4064	325	406	0.62	11.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FKY4`	Arabidopsis thaliana	sp\|Q9FKY4\|PILS7_ARATH Protein PIN-LIKES 7	55.600%	Swiss-Prot	High
`Q9SHL8`	Arabidopsis thaliana	sp\|Q9SHL8\|PILS5_ARATH Protein PIN-LIKES 5	53.300%	Swiss-Prot	High
`Q9C9K5`	Arabidopsis thaliana	sp\|Q9C9K5\|PILS3_ARATH Protein PIN-LIKES 3	43.300%	Swiss-Prot	Medium
`F4HWB6`	Arabidopsis thaliana	sp\|F4HWB6\|PILS1_ARATH Protein PIN-LIKES 1	42.000%	Swiss-Prot	Medium
`Q9C9K4`	Arabidopsis thaliana	sp\|Q9C9K4\|PILS4_ARATH Protein PIN-LIKES 4	39.800%	Swiss-Prot	Medium

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