TkAUNG091810 | RubberDandelionOmics

Gene overview

TkAUNG091810

Reference: TK1151 Chr: ChrUn Coordinates: 25978544-25981259 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1614 bp · TkAUNG091810|TK1151|cDNA

ATTTTTCGGTCTTTAAAATCGAATACTCTTTCTAATAGAAGTGATGTTAGGCAAAATAAGTTGGGTTGTTGGGTTGAAGCGGCGCCATAGAAACACATTCTATTGAACCTCGGCCGACTTTTCCCAAATCTGCTAAAGCAGCTAAAACCCTTCTTCCTCCTCCTCCACCCTCGAGCATTCTCGAGAGCGAGAGCGAGAGAGAGAAACAACTGATCATCGGCCGAAGCAGCCACAGCAATCATGGCCGCTCCCGAAGCTCC...

CDS

Download CDS FASTA

1119 bp · TkAUNG091810|TK1151|CDS

ATGGCCGCTCCCGAAGCTCCTCTATGTTATGTAGGAGTTGCCAAAAAGTCCGCCGCCTTTCGCCTCATGAAACAAATGGGATGGGAAGAAGGCGAAGGTCTTGGCAAGGACAAACAAGGGATCAAAGGTCATGTTAGGGTTACGAACAAACAAGATAATCTAGGTGTTGGTGTGGAGAAGCCAAACGAGTGGGCATTCGATACTACACAGTTTGATAACATTCTTAAAAAACTGAAAGTGCAAGCACCACAACCTAAACA...

Protein

Download Protein FASTA

372 aa · TkAUNG091810|TK1151|PROTEIN

MAAPEAPLCYVGVAKKSAAFRLMKQMGWEEGEGLGKDKQGIKGHVRVTNKQDNLGVGVEKPNEWAFDTTQFDNILKKLKVQAPQPKHDEVEEDDDDDDDDDDDDDEKPNSPKDNTEKTVKATRPQGRYKRRERGKHVNAYSAQDLEGILVKKAEVIQEPEPIFYHGELEVVDASDKLEAQADEYEIVISPDWWGNKFGFVSGGLLGAQSKRKKSNMTSEITQNPNKRTAFYEQDQENLYNLVQDKATTGKQGLGIKDRPR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG091810`
TK1151 ID	TkAUNG091810
OH-1004 ID	LXL04_026400
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG091810

Location ChrUn:25978544-25981259 (+)

Description Similar to GDP1: G-patch domain-containing protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63980`	Involved in ribosome biogenesis, required for normal progression of rRNA processing.	Two Nucleolar Proteins, GDP1 and OLI2, Function As Ribosome Biogenesis Factors and Are Preferentially Involved in Promotion of Leaf Cell Proliferation without Strongly Affecting Leaf Adaxial-Abaxial Patterning in Arabidopsis thaliana .2017 · DOI: 10.3389/fpls.2017.02240

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026400 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006364 rRNA processing Biological Process

GO:0007004 telomere maintenance via telomerase Biological Process

GO:0007080 mitotic metaphase chromosome alignment Biological Process

GO:0008285 negative regulation of cell population proliferation Biological Process

GO:0009637 response to blue light Biological Process

GO:0010972 negative regulation of G2/M transition of mitotic cell cycle Biological Process

GO:0031397 negative regulation of protein ubiquitination Biological Process

GO:0031647 regulation of protein stability Biological Process

GO:0032211 negative regulation of telomere maintenance via telomerase Biological Process

GO:0042127 regulation of cell population proliferation Biological Process

GO:0070198 protein localization to chromosome, telomeric region Biological Process

GO:0090069 regulation of ribosome biogenesis Biological Process

KEGG gene cross-reference

ath:AT1G63980

hsa:54984

rno:305963

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.821

Rank 1 · TkAUNG091810 · TK1151

Cytoplasm0.288

Rank 2 · TkAUNG091810 · TK1151

Cell membrane0.037

Rank 3 · TkAUNG091810 · TK1151

Mitochondrion0.035

Rank 4 · TkAUNG091810 · TK1151

Extracellular0.022

Rank 5 · TkAUNG091810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01585G-patch16-59 aa

PF12656G-patch_222-60 aa

PF07543PGA277-131 aa

PF04546Sigma70_ner87-117 aa

PF12656G-patch_2111-128 aa

PF01585G-patch196-222 aa

PF07543PGA2207-236 aa

PF12656G-patch_2239-257 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG091810	`PF01585`	G-patch	16	59	1e-14	54.9
TkAUNG091810	`PF12656`	G-patch_2	22	60	0.00028	21.6
TkAUNG091810	`PF07543`	PGA2	77	131	5.0	7.9
TkAUNG091810	`PF04546`	Sigma70_ner	87	117	0.34	11.5
TkAUNG091810	`PF12656`	G-patch_2	111	128	0.00028	21.6
TkAUNG091810	`PF01585`	G-patch	196	222	1e-14	54.9
TkAUNG091810	`PF07543`	PGA2	207	236	5.0	7.9
TkAUNG091810	`PF12656`	G-patch_2	239	257	0.00028	21.6
TkAUNG091810	`PF01585`	G-patch	251	256	1e-14	54.9
TkAUNG091810	`PF07543`	PGA2	268	315	5.0	7.9
TkAUNG091810	`PF04546`	Sigma70_ner	276	354	0.34	11.5
TkAUNG091810	`PF25879`	WHD_LYAR	300	371	8.7e-21	74.9
TkAUNG091810	`PF18592`	Tho1_MOS11_C	345	363	0.11	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q940M0`	Arabidopsis thaliana	sp\|Q940M0\|GPDP1_ARATH G-patch domain-containing protein 1	51.900%	Swiss-Prot	High

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