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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG090210
Reference: TK1151 Chr: ChrUn Coordinates: 25611020-25613609 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1874 bp · TkAUNG090210|TK1151|cDNA

CATAAAGATATTATAAAAAAATCCAACTTGCTACCCGTGTCCCTCTTTCATCGACCCATCTCTAAACATCTAATCATCGTTTTCCTTTTCCATGGTTTTCTGACTTTCTCCATACTTCCACTGCAAAATTCTATTCTAGGGTTTTTTTAATTCCGTTAATGGCGCTCTCACACCCCTAAATTGGACACAACATCCATCTCCATGGAAGCTCGTAGTTACAGTAATGCTGCCGCATCCGCACCAGATGGCGGTACAGCTGC...

CDS

Download CDS FASTA

1353 bp · TkAUNG090210|TK1151|CDS

ATGGAAGCTCGTAGTTACAGTAATGCTGCCGCATCCGCACCAGATGGCGGTACAGCTGCTCCACCGCCTGCGCCGCCCCCGATGTCCACTGTCAATGCTCCGCCGCCGTTCTTGGTCAAAACTTACGATATGGTGGATGATCCGGCTACCGATAAGGTTGTTTCCTGGAGCGCTACGAATAACAGCTTCGTCGTCTGGGACCCGCCCGAATTCGCTAAAGACCTTTTGCCCAAATACTTCAAGCACAATAACTTCTCCAG...

Protein

Download Protein FASTA

450 aa · TkAUNG090210|TK1151|PROTEIN

MEARSYSNAAASAPDGGTAAPPPAPPPMSTVNAPPPFLVKTYDMVDDPATDKVVSWSATNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTIIRRKSTSGHHQPAPQPHQQTSSTTACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDTQMQSMVQRLQGMEQRQQQMMSFLAKAVNSPGFLAHFVQQQNESTKFITEGNKKRRYKEDGGVSDNSQDGRIVK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG090210
TK1151 IDTkAUNG090210
OH-1004 IDLXL04_026121
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG090210
LocationChrUn:25611020-25613609 (-)
DescriptionSimilar to HSF8: Heat shock factor protein HSF8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g17750 Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). No verified direct reference in this release
At1g32330 Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0854500 Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026121 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0009408 response to heat Biological Process
GO:0034605 cellular response to heat Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
KEGG gene cross-reference
ath:AT1G32330
ath:AT4G17750
dosa:Os03g0854500
sly:101263626
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.934
Rank 1 · TkAUNG090210 · TK1151
Cytoplasm0.178
Rank 2 · TkAUNG090210 · TK1151
Cell membrane0.024
Rank 3 · TkAUNG090210 · TK1151
Mitochondrion0.019
Rank 4 · TkAUNG090210 · TK1151
Endoplasmic reticulum0.016
Rank 5 · TkAUNG090210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00447HSF_DNA-bind37-126 aa
PF05300MIC19_MIC2551-214 aa
PF14932HAUS-augmin3119-214 aa
PF07787TMEM43128-191 aa
PF12325TMF_TATA_bd133-210 aa
PF17675APG6_N157-207 aa
PF07407Seadorna_VP6157-214 aa
PF26095CC_Bre1157-202 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG090210PF00447HSF_DNA-bind371262.1e-30105.9
TkAUNG090210PF05300MIC19_MIC25512140.003918.3
TkAUNG090210PF14932HAUS-augmin31192140.02814.6
TkAUNG090210PF07787TMEM431281910.01615.3
TkAUNG090210PF12325TMF_TATA_bd1332100.005117.6
TkAUNG090210PF17675APG6_N1572070.01916.1
TkAUNG090210PF07407Seadorna_VP61572140.2611.1
TkAUNG090210PF26095CC_Bre11572020.3811.8
TkAUNG090210PF30810AFAP_C1582050.05514.4
TkAUNG090210PF20994CENPU1602120.0613.7
TkAUNG090210PF22709Mu_Gam-Sipho_Gp157-TOTE1711970.2212.1
TkAUNG090210PF29577FAM161_N1721947.86.9
TkAUNG090210PF16937T3SS_HrpK11802800.1113.1
TkAUNG090210PF29577FAM161_N1942157.86.9
TkAUNG090210PF25868Fn1_32242460.02214.9
TkAUNG090210PF22709Mu_Gam-Sipho_Gp157-TOTE3533700.2212.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P41151Arabidopsis thalianasp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a58.900%Swiss-ProtMedium
Q9LQM7Arabidopsis thalianasp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d47.900%Swiss-ProtMedium
Q84T61Oryza sativa subsp. japonicasp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-150.700%Swiss-ProtHigh

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