TkAUNG090140 | RubberDandelionOmics

Gene overview

TkAUNG090140

Reference: TK1151 Chr: ChrUn Coordinates: 25587491-25591019 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2638 bp · TkAUNG090140|TK1151|cDNA

AAATTAAGGAGTTGAATAAGCAAATCCCAAACAGCCGTAGGAAAAAATAAAAATAGCCTGGTAACCTAAAAGAAAAAACGCGCACGCCTTTTCTTGCTGCCGGCGCAAAGACATTCGATTCCATATCATTCATATCTCGGCCTCCCGCCGTCAACCAAGATCTCCGGCCTGCTCCATCTCCGTCGACCCCTCCGGCGTTGCTGCTTCTTCCTCCCGATCCGATTTCAGCCTTCAGCGCTGCTTCTTCACAGGCAACTTCT...

CDS

Download CDS FASTA

1674 bp · TkAUNG090140|TK1151|CDS

ATGGATTGTTACAACAATACGAAGATTCTAGAATCCAACATGTATACGGTTCTTATATCTATACCAAATTGGGGTGGATTCCTGAATTACATCACGTACATTGGAATGGGGAAGTTGTTTCTGTTTCTGATCTTGATCTCCACGTATATAGTAATTTATGGAACTCCTAGATTCGGTGGTCACCATTTCTCCTTGGGTACCCAACGTTATACCAAAACTTTTTCAAAAAGACCAAAGTGGGTGGAACATCTTGACCAAAA...

Protein

Download Protein FASTA

557 aa · TkAUNG090140|TK1151|PROTEIN

MDCYNNTKILESNMYTVLISIPNWGGFLNYITYIGMGKLFLFLILISTYIVIYGTPRFGGHHFSLGTQRYTKTFSKRPKWVEHLDQKKPIIDLDTVILAINCAAGATSFFEGHVSPHKPTELFYILVFKLIVTFIWKLFSLCVASISTFVYIILQIFHFLLSYKSESFIHVILRNLFPHTSTNVRVRCFQILYWPIFLHNNDSRSESCVEYAEKASVRKHSMWLNIVIDILLGNLFGFTLLTFSDSVCLTILTFTSDITN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG090140`
TK1151 ID	TkAUNG090140
OH-1004 ID	LXL04_026025
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.900
Protein coverage (%)	TK1151 91.921 / OH-1004 65.810 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkAUNG090140`
Location	ChrUn:25587491-25591019 (+)
Description	Similar to Pigq: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_026025` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0005975 carbohydrate metabolic process Biological Process GO:0006506 GPI anchor biosynthetic process Biological Process GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity Molecular Function
KEGG gene cross-reference	hsa:9091 mmu:14755 sce:YGR216C spo:2540323 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.483

Rank 1 · TkAUNG090140 · TK1151

Nucleus0.177

Rank 2 · TkAUNG090140 · TK1151

Cytoplasm0.150

Rank 3 · TkAUNG090140 · TK1151

Golgi apparatus0.147

Rank 4 · TkAUNG090140 · TK1151

Cell membrane0.140

Rank 5 · TkAUNG090140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05024Gpi1130-156 aa

PF05024Gpi1183-454 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG090140	`PF05024`	Gpi1	130	156	2e-72	244.6
TkAUNG090140	`PF05024`	Gpi1	183	454	2e-72	244.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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