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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG084380
Reference: TK1151 Chr: ChrUn Coordinates: 23992997-23998589 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3408 bp · TkAUNG084380|TK1151|cDNA

ATTCCACTTGGTTTACTACATTTATGATCACAATTCGATTTCTCATTCTTTTCTCCACCTCATAATTCCCGCCTGGATGTTCGCAATCGGAGATAACCTTACTGTTTAGAACTTCAACAGGTAAGAATGTATCCATGGTTCGAGAAATAGTATCACGATTGCGTATGAGCTTAACATGCAATGATCCCCTGCTAACGTTCCTTATTGCTCATCCGATTACTTTCAGGATATGGTCTCAAATCTACAACTACTTACACGTT...

CDS

Download CDS FASTA

2991 bp · TkAUNG084380|TK1151|CDS

ATGAGTTCTAATGTATCAGATTCAAACACTCTTTCAGGGGCTATTTCAACAACACATAAGACAGTTCTTGCCACAAAATCCACACAGATTCAAAAGGAAAATTTCAAGAAGCTTTCATCTTACTTGGAGAAAACAGCATCCATTCTACAAGAACTGACAAAGTTTGAGATCAATGATTCCGGGAGCTTGAAAAACGTGATTCATGTTCTTAGTAAACATGTTTCAGAAGCTAACAATCTCGCTCTTGAATGCAGCAACAG...

Protein

Download Protein FASTA

996 aa · TkAUNG084380|TK1151|PROTEIN

MSSNVSDSNTLSGAISTTHKTVLATKSTQIQKENFKKLSSYLEKTASILQELTKFEINDSGSLKNVIHVLSKHVSEANNLALECSNRNRIYLLLNSRKIVKSLENVTKEIGGDINLLSNLIPFNGLSQDITKLSNTMMDAKYQETLREAEIKEKIELGIRERNVDRAFANDLLVSIAEVIGISTDQSVLRQEYEDFKNEMETVGPAEDVAEVLQIEQIVGLLGKADMIATLEEREKKYFSKRNSLGRQPLEPLQSFYCPI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG084380
TK1151 IDTkAUNG084380
OH-1004 IDLXL04_035375
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.500
Protein coverage (%)TK1151 99.598 / OH-1004 98.315
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG084380
LocationChrUn:23992997-23998589 (+)
DescriptionSimilar to PUB44: U-box domain-containing protein 44
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g20780 Functions as an E3 ubiquitin-protein ligase.
Identification of a novel E3 ubiquitin ligase that is required for suppression of premature senescence in Arabidopsis.2009 · DOI: 10.1111/j.1365-313x.2009.03846.x
At1g76390 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At1g68940 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0657100 E3 ubiquitin-protein ligase that functions as a negative regulator of brassinosteroid (BR) signaling.
OsBZR1 turnover mediated by OsSK22-regulated U-box E3 ligase OsPUB24 in rice BR response.2019 · DOI: 10.1111/tpj.14332
UniProt: A2ZLU6 Defense related protein that negatively regulates programmed cell death. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035375 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006970 response to osmotic stress Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0010115 regulation of abscisic acid biosynthetic process Biological Process
GO:0010150 leaf senescence Biological Process
GO:0010271 regulation of chlorophyll catabolic process Biological Process
GO:0010380 regulation of chlorophyll biosynthetic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0090359 negative regulation of abscisic acid biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G20780
ath:AT1G76390
dosa:Os03g0657100
dosa:Os06g0102700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.459
Rank 1 · TkAUNG084380 · TK1151
Nucleus0.299
Rank 2 · TkAUNG084380 · TK1151
Cell membrane0.299
Rank 3 · TkAUNG084380 · TK1151
Endoplasmic reticulum0.065
Rank 4 · TkAUNG084380 · TK1151
Golgi apparatus0.064
Rank 5 · TkAUNG084380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04826Arm_219-46 aa
PF27061Gasdermin_protease22-106 aa
PF19584MCAfunc23-116 aa
PF11698V-ATPase_H_C50-91 aa
PF11789zf-Nse254-295 aa
PF04564U-box256-322 aa
PF13923zf-C3HC4_2257-295 aa
PF13445zf-RING_UBOX258-294 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG084380PF04826Arm_219460.0009619.4
TkAUNG084380PF27061Gasdermin_protease221060.04413.7
TkAUNG084380PF19584MCAfunc231160.002718.1
TkAUNG084380PF11698V-ATPase_H_C50910.3611.7
TkAUNG084380PF11789zf-Nse2542951.1e-0525.9
TkAUNG084380PF04564U-box2563221.2e-1764.5
TkAUNG084380PF13923zf-C3HC4_22572950.0009419.6
TkAUNG084380PF13445zf-RING_UBOX2582940.0001322.6
TkAUNG084380PF12678zf-rbx12722950.07614.0
TkAUNG084380PF28415SIL1_FES1_HPBP1_C3633970.0002621.2
TkAUNG084380PF04826Arm_23634050.0009619.4
TkAUNG084380PF24993GNC1_N3644100.01216.1
TkAUNG084380PF13646HEAT_23663952.2e-0835.0
TkAUNG084380PF00514Arm3693951e-2383.3
TkAUNG084380PF02985HEAT3693944.1e-0730.3
TkAUNG084380PF11698V-ATPase_H_C3784390.3611.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LM76Arabidopsis thalianasp|Q9LM76|PUB44_ARATH U-box domain-containing protein 4427.300%Swiss-ProtLow
Q9SFX2Arabidopsis thalianasp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 4327.300%Swiss-ProtLow
Q9CAA7Arabidopsis thalianasp|Q9CAA7|PUB42_ARATH Putative U-box domain-containing protein 4225.600%Swiss-ProtLow
Q10FT0Oryza sativa subsp. japonicasp|Q10FT0|PUB24_ORYSJ U-box domain-containing protein 2426.600%Swiss-ProtLow
A2ZLU6Oryza sativa subsp. indicasp|A2ZLU6|SL11_ORYSI Protein spotted leaf 1126.500%Swiss-ProtLow

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