RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG078740
Reference: TK1151 Chr: ChrUn Coordinates: 22521766-22524351 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1215 bp · TkAUNG078740|TK1151|cDNA

GTGTGAATGAGAATGGAATACCTTTGCGCACTTTCTCTCTCTTCCTCTCTCTCTTCCTCTACCTTTGCTCAACTCCAAGTACACGGCTGACCGCTCCATTCAGTTTCCCCACAACTCCACCTCAATCGATTGAGTTGAGAGGTGTCTTCTCCTTCACTAAAGAACAAAGCACAATGAGACCATTATCAATACCTTCAATCAGATAAAACACATCACCGAGTTCAAAAACAAAATGGGAGGCTGCTGTTGCTGCTTTTCCA...

CDS

Download CDS FASTA

615 bp · TkAUNG078740|TK1151|CDS

ATGGGAGGCTGCTGTTGCTGCTTTTCCAAAGGAGTAGAACTCAACTCTTCACCCCGATTCTACCATTATCCAATAGCATCAGAGGAACGCCAACCTTTATCATCAAACAGTGGTGCAGTATCTGCACTTTCCACAGGTCTTTTAGTTGACACAAATCTTGAAACATCAATACCAGACACATACAGGCCTCCACCTACCCCTATCCCATATGATGTAAATGTAAATGTTGACCATCCAAGAAGTCCACTCAACAACCGAGA...

Protein

Download Protein FASTA

204 aa · TkAUNG078740|TK1151|PROTEIN

MGGCCCCFSKGVELNSSPRFYHYPIASEERQPLSSNSGAVSALSTGLLVDTNLETSIPDTYRPPPTPIPYDVNVNVDHPRSPLNNREASVGVDEITISNSVSGETVIKEVKGPDCKDITDIELVATKEVDDEIDKSGELKKPSGPILPPEECPTCLEEYDEENPKIITKCEHHFHLSCILEWMERSDTCPVCDQEMIINFPVNE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG078740
TK1151 IDTkAUNG078740
OH-1004 IDLXL04_005556
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG078740
LocationChrUn:22521766-22524351 (+)
DescriptionSimilar to RHB1A: Probable E3 ubiquitin-protein ligase RHB1A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g00335 Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. No verified direct reference in this release
At4g23450 Possesses E3 ubiquitin-protein ligase activity in vitro when associated with the E2 enzyme UBC8 in vitro.
The Arabidopsis C3H2C3-type RING E3 ubiquitin ligase AtAIRP1 is a positive regulator of an abscisic acid-dependent response to drought stress.2010 · DOI: 10.1104/pp.110.164749
At3g02290 Mediates E2-dependent protein ubiquitination. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005556 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009414 response to water deprivation Biological Process
GO:0009561 megagametogenesis Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010498 proteasomal protein catabolic process Biological Process
GO:0010729 positive regulation of hydrogen peroxide biosynthetic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0051603 proteolysis involved in protein catabolic process Biological Process
GO:0051726 regulation of cell cycle Biological Process
GO:0055046 microgametogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT3G02290
ath:AT4G00335
ath:AT4G14220
ath:AT4G23450
ath:AT5G22000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.431
Rank 1 · TkAUNG078740 · TK1151
Nucleus0.293
Rank 2 · TkAUNG078740 · TK1151
Cell membrane0.244
Rank 3 · TkAUNG078740 · TK1151
Golgi apparatus0.120
Rank 4 · TkAUNG078740 · TK1151
Lysosome / Vacuole0.116
Rank 5 · TkAUNG078740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13639zf-RING_24-9 aa
PF13920zf-C3HC4_34-10 aa
PF26470DUF814518-25 aa
PF26470DUF8145148-160 aa
PF12678zf-rbx1150-192 aa
PF13920zf-C3HC4_3150-195 aa
PF13639zf-RING_2151-192 aa
PF13923zf-C3HC4_2151-192 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG078740PF13639zf-RING_2491.1e-1248.7
TkAUNG078740PF13920zf-C3HC4_34100.01615.7
TkAUNG078740PF26470DUF814518250.1213.0
TkAUNG078740PF26470DUF81451481600.1213.0
TkAUNG078740PF12678zf-rbx11501923.1e-1144.1
TkAUNG078740PF13920zf-C3HC4_31501950.01615.7
TkAUNG078740PF13639zf-RING_21511921.1e-1248.7
TkAUNG078740PF13923zf-C3HC4_21511923.4e-0937.1
TkAUNG078740PF14634zf-RING_51511948.8e-0729.5
TkAUNG078740PF17123zf-RING_111511792.9e-0524.4
TkAUNG078740PF12861zf-ANAPC111521983e-0834.3
TkAUNG078740PF00097zf-C3HC41521925e-0833.4
TkAUNG078740PF13445zf-RING_UBOX1521901.1e-0629.3
TkAUNG078740PF11789zf-Nse1521920.02115.4
TkAUNG078740PF15227zf-C3HC4_41521920.03315.0
TkAUNG078740PF23413zf_RING_Vps8_fungal1651940.01515.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q2HIJ8Arabidopsis thalianasp|Q2HIJ8|RHB1A_ARATH Probable E3 ubiquitin-protein ligase RHB1A39.500%Swiss-ProtMedium
Q93ZF6Arabidopsis thalianasp|Q93ZF6|AIRP1_ARATH E3 ubiquitin-protein ligase AIRP138.800%Swiss-ProtMedium
Q8LE94Arabidopsis thalianasp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g0229075.000%Swiss-ProtLow

JBrowse

View in Genome Browser