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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG073280
Reference: TK1151 Chr: ChrUn Coordinates: 21148917-21150079 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1077 bp · TkAUNG073280|TK1151|cDNA

ATGTCCGGTGGCAGTGGCAGCGGCGGTGGCGGTGGCGTTAGTGGTGGTGGTCCATCACTCATGGACTCTCTCTTCCAACGCACCCTCGACGACCTAATCAAAGGCATCCGTCTCCATACTCCCGGCGCCGCCCAATCCACCTTCATCTCAAAATCGCTCGACGAGATCCGCCGCGAAATCAAATCCACGGACTTACAAACCAAATCTACTGCCCTCCAGAAACTCACTTACCTCCACTCCCTCCACGGCATCGACATGTC...

CDS

Download CDS FASTA

1077 bp · TkAUNG073280|TK1151|CDS

ATGTCCGGTGGCAGTGGCAGCGGCGGTGGCGGTGGCGTTAGTGGTGGTGGTCCATCACTCATGGACTCTCTCTTCCAACGCACCCTCGACGACCTAATCAAAGGCATCCGTCTCCATACTCCCGGCGCCGCCCAATCCACCTTCATCTCAAAATCGCTCGACGAGATCCGCCGCGAAATCAAATCCACGGACTTACAAACCAAATCTACTGCCCTCCAGAAACTCACTTACCTCCACTCCCTCCACGGCATCGACATGTC...

Protein

Download Protein FASTA

358 aa · TkAUNG073280|TK1151|PROTEIN

MSGGSGSGGGGGVSGGGPSLMDSLFQRTLDDLIKGIRLHTPGAAQSTFISKSLDEIRREIKSTDLQTKSTALQKLTYLHSLHGIDMSWAAFHAVELTSSPSFAHKKTGYLAASLSFRPSTEVLLLLTNQLRKDLSSTNQHEVSLALECLAVICTPDFARDLTPDIFTLLASSKIENLESTDNAQTLAATVGVFCELASKEPRSYLPLAPEFYRILVDSRNNWVLIKVLKIFSKLAKLEPRLAKKVVEPICDHMKRSEAKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG073280
TK1151 IDTkAUNG073280
OH-1004 IDLXL04_020198
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)92.200
Protein coverage (%)TK1151 100.000 / OH-1004 43.386
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG073280
LocationChrUn:21148917-21150079 (-)
DescriptionSimilar to DELTA-ADR: AP-3 complex subunit delta
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g48760 Part of the AP-3 complex, an adaptor-related complex which seems to be clathrin-associated.
The AP-3 adaptor complex is required for vacuolar function in Arabidopsis.2011 · DOI: 10.1038/cr.2011.99

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020198 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006605 protein targeting Biological Process
GO:0006623 protein targeting to vacuole Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0006896 Golgi to vacuole transport Biological Process
GO:0006903 vesicle targeting Biological Process
GO:0007032 endosome organization Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0019882 antigen processing and presentation Biological Process
GO:0032438 melanosome organization Biological Process
GO:0035646 endosome to melanosome transport Biological Process
GO:0035654 clathrin-coated vesicle cargo loading, AP-3-mediated Biological Process
GO:0048007 antigen processing and presentation, exogenous lipid antigen via MHC class Ib Biological Process
KEGG gene cross-reference
ath:AT1G48760
bta:281023
ddi:DDB_G0279537
hsa:8943
mmu:11776
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.511
Rank 1 · TkAUNG073280 · TK1151
Golgi apparatus0.347
Rank 2 · TkAUNG073280 · TK1151
Nucleus0.185
Rank 3 · TkAUNG073280 · TK1151
Lysosome / Vacuole0.118
Rank 4 · TkAUNG073280 · TK1151
Endoplasmic reticulum0.096
Rank 5 · TkAUNG073280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01602Adaptin_N47-172 aa
PF12717Cnd148-79 aa
PF11698V-ATPase_H_C54-68 aa
PF29232HEAT_spiro59-73 aa
PF26017BACK_BTBD872-107 aa
PF01602Adaptin_N175-356 aa
PF12717Cnd1179-269 aa
PF03081Exo70_C194-286 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG073280PF01602Adaptin_N471722e-60205.6
TkAUNG073280PF12717Cnd148790.0005920.6
TkAUNG073280PF11698V-ATPase_H_C54680.2912.0
TkAUNG073280PF29232HEAT_spiro59730.02214.4
TkAUNG073280PF26017BACK_BTBD8721070.2112.7
TkAUNG073280PF01602Adaptin_N1753562e-60205.6
TkAUNG073280PF12717Cnd11792690.0005920.6
TkAUNG073280PF03081Exo70_C1942860.09112.5
TkAUNG073280PF29232HEAT_spiro2072670.02214.4
TkAUNG073280PF26017BACK_BTBD82222690.2112.7
TkAUNG073280PF29232HEAT_spiro2833460.02214.4
TkAUNG073280PF11698V-ATPase_H_C3143480.2912.0
TkAUNG073280PF03081Exo70_C3223570.09112.5
TkAUNG073280PF12717Cnd13233520.0005920.6
TkAUNG073280PF26017BACK_BTBD83263550.2112.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C744Arabidopsis thalianasp|Q9C744|AP3D_ARATH AP-3 complex subunit delta62.100%Swiss-ProtHigh

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