Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1244 bp · TkAUNG072210|TK1151|cDNA
TAAAAATTAGGTCGCATTGATTCATCGGATGAAGGGCAATTTCGTCATTTTATCTAAATAAAAAGTACTCGTTGTTATCCGCAGTCTGCTCCACATAGCTTTCACGGCATGTTCCGTGAACACGTAAAATCCTAACCCTAATCTCACTCAAGTTCAAGTCGATCAATTCCCCTTACGATTAGTAATAATCAAATTTATAATCCGAATACAGAACTTGGAATTCAGGATGGCGGTGATTTTGGAGGATATAGTTAAAGCTG...
1614 bp · TkAUNG072210|TK1151|CDS
ATGGCGGTGATTTTGGAGGATATAGTTAAAGCTGTGGAGGCATGGTTAAGGATTCTCAAGGAACCAGAACCCCACGTTGACCCGAATCTTGATCCGGTTCTTTTAGTTCCTGGGATTGCTGGTTCTATTCTCAATGCTAAAGATGCTGAAACTGGGAAAGAAGAGAGGGTTTGGGTTCGGATTTGGGAAGCTGATCGTGAATTCCGTGCCAAACTTTGGTGCAGATTCGATCCTGATTCTGGTAAAACCGTGTCCTTGGA...
Protein
Download Protein FASTA537 aa · TkAUNG072210|TK1151|PROTEIN
MAVILEDIVKAVEAWLRILKEPEPHVDPNLDPVLLVPGIAGSILNAKDAETGKEERVWVRIWEADREFRAKLWCRFDPDSGKTVSLDPNISIVVPEDRDGLYAIDCLDPDMVIGRDNVCYFHDMINEMTSWGYQEGKTLFGFGYDFRQSNRLKETMDGLAVKLEAIYTASGGKKINVITHSMGGLLVKCFMTLHPDICEKYVKSWIAIAAPFQGAPGYVTSTLLNGMSFVDGLAAYFFVNKWSFHQLLIECPSIYELMAC...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG072210 |
|---|---|
| TK1151 ID | TkAUNG072210 |
| OH-1004 ID | LXL04_019508 |
| Relationship / confidence | Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG072210 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | ChrUn:20879855-20884448 (+) | |||||||||
| Description | Similar to LCAT4: Lecithin-cholesterol acyltransferase-like 4 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006629 lipid metabolic process Biological Process GO:0006631 fatty acid metabolic process Biological Process GO:0006644 phospholipid metabolic process Biological Process GO:0006650 glycerophospholipid metabolic process Biological Process GO:0006651 diacylglycerol biosynthetic process Biological Process GO:0006658 phosphatidylserine metabolic process Biological Process GO:0006672 ceramide metabolic process Biological Process GO:0009062 fatty acid catabolic process Biological Process GO:0009395 phospholipid catabolic process Biological Process GO:0016042 lipid catabolic process Biological Process GO:0034638 phosphatidylcholine catabolic process Biological Process GO:0046338 phosphatidylethanolamine catabolic process Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G27480 ath:AT3G03310 ath:AT4G19860 bta:282271 hsa:23659 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF07819PGAP132-46 aaPF00561Abhydrolase_132-43 aaPF02450LCAT82-397 aaPF01674Lipase_2122-186 aaPF05990DUF900139-187 aaPF00561Abhydrolase_1140-201 aaPF12146Hydrolase_4150-218 aaPF05057DUF676164-234 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkAUNG072210 | PF07819 | PGAP1 | 32 | 46 | 1.8e-06 | 28.6 |
| TkAUNG072210 | PF00561 | Abhydrolase_1 | 32 | 43 | 0.00022 | 21.7 |
| TkAUNG072210 | PF02450 | LCAT | 82 | 397 | 4.3e-29 | 102.7 |
| TkAUNG072210 | PF01674 | Lipase_2 | 122 | 186 | 0.014 | 15.6 |
| TkAUNG072210 | PF05990 | DUF900 | 139 | 187 | 0.016 | 15.4 |
| TkAUNG072210 | PF00561 | Abhydrolase_1 | 140 | 201 | 0.00022 | 21.7 |
| TkAUNG072210 | PF12146 | Hydrolase_4 | 150 | 218 | 0.0033 | 17.5 |
| TkAUNG072210 | PF05057 | DUF676 | 164 | 234 | 0.0019 | 18.5 |
| TkAUNG072210 | PF07819 | PGAP1 | 167 | 219 | 1.8e-06 | 28.6 |
| TkAUNG072210 | PF06028 | DUF915 | 173 | 215 | 0.0016 | 18.6 |
| TkAUNG072210 | PF28408 | RNF216_N | 185 | 207 | 0.16 | 12.2 |
| TkAUNG072210 | PF06028 | DUF915 | 336 | 366 | 0.0016 | 18.6 |
| TkAUNG072210 | PF06028 | DUF915 | 438 | 504 | 0.0016 | 18.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.