TkAUNG071380 | RubberDandelionOmics

Gene overview

TkAUNG071380

Reference: TK1151 Chr: ChrUn Coordinates: 20650199-20652264 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

801 bp · TkAUNG071380|TK1151|cDNA

ATGTATAAGAATCAGCTGCAAGAGCTGGCGCAGAGAAGCTGCTTTAACCTCCCATCGTACACGTGTATCAGAGAAGGACCTGACCACGCGCCGAGGTTCAAGGCCGTCGTTAACTTCAACGGCGACTCCTTTGAAAGCCCTAACTATTTCTCCACTCTCCGCCAGGCTGAGCACGCCGCCGCCGAGGTCGCTCTCTCCTCCCTTTCGTCCCACTCCCTCGCCGCCAGAATCCTCGTAAGTTCTTCTCTCCGTACCACTTT...

CDS

Download CDS FASTA

801 bp · TkAUNG071380|TK1151|CDS

ATGTATAAGAATCAGCTGCAAGAGCTGGCGCAGAGAAGCTGCTTTAACCTCCCATCGTACACGTGTATCAGAGAAGGACCTGACCACGCGCCGAGGTTCAAGGCCGTCGTTAACTTCAACGGCGACTCCTTTGAAAGCCCTAACTATTTCTCCACTCTCCGCCAGGCTGAGCACGCCGCCGCCGAGGTCGCTCTCTCCTCCCTTTCGTCCCACTCCCTCGCCGCCAGAATCCTCGTAAGTTCTTCTCTCCGTACCACTTT...

Protein

Download Protein FASTA

266 aa · TkAUNG071380|TK1151|PROTEIN

MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKAVVNFNGDSFESPNYFSTLRQAEHAAAEVALSSLSSHSLAARILVSSSLRTTFHRNLLQEISQRVGAPLPRYTTYRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNAAMSAWSSLKQLAKQDASSSSEPENNDEQEQIRIARALMNYKLKQKIGKKKFTTPVPRPPSPQRPPLMTSKILPFLYQNHDPSSSSSSSSSLSPHKTARPARVISLCGTSGRRTGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG071380`
TK1151 ID	TkAUNG071380
OH-1004 ID	LXL04_004493
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.000
Protein coverage (%)	TK1151 92.105 / OH-1004 72.754 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG071380

Location ChrUn:20650199-20652264 (-)

Description Similar to DRB2: Double-stranded RNA-binding protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28380`	Binds double-stranded RNA.	Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana.2005 · DOI: 10.1007/s11103-004-6853-5
`At5g41070`	Binds double-stranded RNA.	Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana.2005 · DOI: 10.1007/s11103-004-6853-5
`At3g26932`	Binds double-stranded RNA.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0480500`	Binds double-stranded RNA.	No verified direct reference in this release
`Os05g0150400`	Binds double-stranded RNA.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004493 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0035196 miRNA processing Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003725 double-stranded RNA binding Molecular Function

KEGG gene cross-reference

ath:AT2G28380

ath:AT3G26932

ath:AT5G41070

dosa:Os05g0150400

dosa:Os10g0480500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.745

Rank 1 · TkAUNG071380 · TK1151

Cytoplasm0.334

Rank 2 · TkAUNG071380 · TK1151

Cell membrane0.046

Rank 3 · TkAUNG071380 · TK1151

Endoplasmic reticulum0.041

Rank 4 · TkAUNG071380 · TK1151

Mitochondrion0.023

Rank 5 · TkAUNG071380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00035dsrm2-68 aa

PF14709DND1_DSRM4-68 aa

PF03368Dicer_dimer42-70 aa

PF24995DSRM_243-68 aa

PF00035dsrm90-153 aa

PF14709DND1_DSRM128-150 aa

PF03368Dicer_dimer129-156 aa

PF24995DSRM_2134-154 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG071380	`PF00035`	dsrm	2	68	5.5e-29	101.3
TkAUNG071380	`PF14709`	DND1_DSRM	4	68	0.01	16.8
TkAUNG071380	`PF03368`	Dicer_dimer	42	70	0.038	14.7
TkAUNG071380	`PF24995`	DSRM_2	43	68	0.19	13.0
TkAUNG071380	`PF00035`	dsrm	90	153	5.5e-29	101.3
TkAUNG071380	`PF14709`	DND1_DSRM	128	150	0.01	16.8
TkAUNG071380	`PF03368`	Dicer_dimer	129	156	0.038	14.7
TkAUNG071380	`PF24995`	DSRM_2	134	154	0.19	13.0
TkAUNG071380	`PF00035`	dsrm	149	162	5.5e-29	101.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SKN2`	Arabidopsis thaliana	sp\|Q9SKN2\|DRB2_ARATH Double-stranded RNA-binding protein 2	70.100%	Swiss-Prot	High
`Q8GY79`	Arabidopsis thaliana	sp\|Q8GY79\|DRB5_ARATH Double-stranded RNA-binding protein 5	62.700%	Swiss-Prot	High
`Q9LJF5`	Arabidopsis thaliana	sp\|Q9LJF5\|DRB3_ARATH Double-stranded RNA-binding protein 3	60.600%	Swiss-Prot	High
`Q9AV50`	Oryza sativa subsp. japonica	sp\|Q9AV50\|DRB6_ORYSJ Double-stranded RNA-binding protein 6	76.500%	Swiss-Prot	High
`Q0DKP4`	Oryza sativa subsp. japonica	sp\|Q0DKP4\|DRB2_ORYSJ Double-stranded RNA-binding protein 2	71.300%	Swiss-Prot	Medium

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