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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG068490
Reference: TK1151 Chr: ChrUn Coordinates: 19890246-19901068 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2727 bp · TkAUNG068490|TK1151|cDNA

ATGAACTCTCGTGTTGCTATTCTCTTCTCTCTTCTTATCATATCTCTGATTGCCTCCACCATCTCTGCTTCCAATGAGGGTAATGAGACCGATTACCAGGCGTTAATGCAGTTCAAGTCACTGGTCAGAAATGAAGGTCTAAGGTCATGGAACTCTTCCTTTCATCACTGTGATTGGAGTGGTGTTTCATGTGGGAAACAACACAGAAGAGTCACTGCTCTACGACTCAAGTCACAAGGCCTAGAAGGCTCATTGTCTCC...

CDS

Download CDS FASTA

2727 bp · TkAUNG068490|TK1151|CDS

ATGAACTCTCGTGTTGCTATTCTCTTCTCTCTTCTTATCATATCTCTGATTGCCTCCACCATCTCTGCTTCCAATGAGGGTAATGAGACCGATTACCAGGCGTTAATGCAGTTCAAGTCACTGGTCAGAAATGAAGGTCTAAGGTCATGGAACTCTTCCTTTCATCACTGTGATTGGAGTGGTGTTTCATGTGGGAAACAACACAGAAGAGTCACTGCTCTACGACTCAAGTCACAAGGCCTAGAAGGCTCATTGTCTCC...

Protein

Download Protein FASTA

908 aa · TkAUNG068490|TK1151|PROTEIN

MNSRVAILFSLLIISLIASTISASNEGNETDYQALMQFKSLVRNEGLRSWNSSFHHCDWSGVSCGKQHRRVTALRLKSQGLEGSLSPHVGNLSFLRFFSLTDNNLQGTIPHELGRLSRLRLLSLASNNFIGVIPSNLSGCSNLEELHLGHNKLVGSIPKEISFLSKLTYLNIHDNKLTGGIPPALGNITSMNMFFVINNPLGGSIPDTLGNWKSLTELYLGSCNLSGTIPHSIFNLSLLTDLSLSGNQLTGSLPSALGTM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG068490
TK1151 IDTkAUNG068490
OH-1004 IDLXL04_012319
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)73.300
Protein coverage (%)TK1151 99.559 / OH-1004 48.494
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG068490
LocationChrUn:19890246-19901068 (+)
DescriptionSimilar to At3g47570: Probable LRR receptor-like serine/threonine-protein kinase At3g47570
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g47570 Probable LRR receptor-like serine/threonine-protein kinase At3g47570. No verified direct reference in this release
At3g47110 Putative receptor-like protein kinase At3g47110. No verified direct reference in this release
At5g20480 Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs); phosphorylates BIK1 upon elicitation to regulate immune responses such as defense hormone expression (e.g. jasmonic acid (JA) and salicylic acid (SA)). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: Q1MX30 Receptor kinase that detects X.oryzae pv. oryzae protein Ax21 to promote innate immunity. No verified direct reference in this release
Os11g0569733 Receptor kinase that detects X.oryzae pv. oryzae protein Ax21 to promote innate immunity.
Cleavage and nuclear localization of the rice XA21 immune receptor.2012 · DOI: 10.1038/ncomms1932
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012319 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0009617 response to bacterium Biological Process
GO:0005634 nucleus Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0032541 cortical endoplasmic reticulum Cellular Component
GO:1990578 perinuclear endoplasmic reticulum membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT3G47570
osa:107276510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.875
Rank 1 · TkAUNG068490 · TK1151
Endoplasmic reticulum0.085
Rank 2 · TkAUNG068490 · TK1151
Cytoplasm0.058
Rank 3 · TkAUNG068490 · TK1151
Nucleus0.038
Rank 4 · TkAUNG068490 · TK1151
Lysosome / Vacuole0.023
Rank 5 · TkAUNG068490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_229-64 aa
PF13855LRR_871-129 aa
PF23211LRR_LRWD173-174 aa
PF12799LRR_480-109 aa
PF23598LRR_1485-196 aa
PF00560LRR_195-116 aa
PF12799LRR_495-130 aa
PF13855LRR_8118-177 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG068490PF08263LRRNT_229647.7e-0936.4
TkAUNG068490PF13855LRR_8711299.9e-31106.0
TkAUNG068490PF23211LRR_LRWD1731740.01915.4
TkAUNG068490PF12799LRR_4801092.4e-2279.2
TkAUNG068490PF23598LRR_14851967.7e-2278.2
TkAUNG068490PF00560LRR_1951162.9e-39125.3
TkAUNG068490PF12799LRR_4951302.4e-2279.2
TkAUNG068490PF13855LRR_81181779.9e-31106.0
TkAUNG068490PF12799LRR_41181572.4e-2279.2
TkAUNG068490PF00560LRR_11191402.9e-39125.3
TkAUNG068490PF24758LRR_At5g563701321537e-0833.1
TkAUNG068490PF29594LRR_SKP21321720.2311.4
TkAUNG068490PF00560LRR_11421642.9e-39125.3
TkAUNG068490PF12799LRR_41421782.4e-2279.2
TkAUNG068490PF00560LRR_11661872.9e-39125.3
TkAUNG068490PF12799LRR_41662012.4e-2279.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGP4Arabidopsis thalianasp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g4757041.500%Swiss-ProtLow
Q9SD62Arabidopsis thalianasp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g4711044.800%Swiss-ProtLow
C0LGT6Arabidopsis thalianasp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR39.400%Swiss-ProtMedium
Q1MX30Oryza sativa subsp. indicasp|Q1MX30|XA21_ORYSI Receptor kinase-like protein Xa2143.900%Swiss-ProtMedium
Q2R2D5Oryza sativa subsp. japonicasp|Q2R2D5|XA21_ORYSJ Receptor kinase-like protein Xa2148.700%Swiss-ProtLow

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