TkAUNG066880 | RubberDandelionOmics

Gene overview

TkAUNG066880

Reference: TK1151 Chr: ChrUn Coordinates: 19412444-19414218 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1129 bp · TkAUNG066880|TK1151|cDNA

TTTTGTTTCTTTTCTATTGTGTTGCCTTGCTCCCAAAGTCGAGAGATCCCCCATTATTAAGAGCTCTGTAGTTTTGCTCTCGTATCAAAACTAAAAGTTCGAATCCGAATACGAAAACCTAAATCTCCGGTAGAATCTGATCAGTTATGGCGAGATACGATAGAGCTATAACGGTGTTCTCCCCCGACGGTCACCTGTTCCAAGTCGAATACGCCCTGGAAGCCGTACGCAAGGGTAACGCCGCCGTCGGTGTTCGTGGC...

CDS

Download CDS FASTA

747 bp · TkAUNG066880|TK1151|CDS

ATGGCGAGATACGATAGAGCTATAACGGTGTTCTCCCCCGACGGTCACCTGTTCCAAGTCGAATACGCCCTGGAAGCCGTACGCAAGGGTAACGCCGCCGTCGGTGTTCGTGGCACTGACACCATCGTCCTTGGCGTCGAGAAGAAGTCCACCGTTAAACTTCAAGACTCAAGATCAGTTAGGAAAATTGTAAATTTGGATGACCACATAGCACTAGCATGTGCTGGACTAAAAGCAGATGCCCGTGTTCTTATCAACAA...

Protein

Download Protein FASTA

248 aa · TkAUNG066880|TK1151|PROTEIN

MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVNLDDHIALACAGLKADARVLINKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGIPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKETSGQETIKLAIRALLEVVESGGKNIEVAVMTKEGLRQLEEAEIDAVVAEIEAEKAAAEAAKKGPAKET

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG066880`
TK1151 ID	TkAUNG066880
OH-1004 ID	LXL04_007291
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG066880

Location ChrUn:19412444-19414218 (-)

Description Similar to PAD1: Proteasome subunit alpha type-7

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g66140`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release
`At3g51260`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase.2001 · DOI: 10.1093/emboj/20.11.2742

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YXU2`	The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007291 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process

GO:0000502 proteasome complex Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005839 proteasome core complex Cellular Component

GO:0009536 plastid Cellular Component

GO:0019773 proteasome core complex, alpha-subunit complex Cellular Component

KEGG gene cross-reference

ath:AT5G66140

cam:101498666

dosa:Os09g0538200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.654

Rank 1 · TkAUNG066880 · TK1151

Nucleus0.613

Rank 2 · TkAUNG066880 · TK1151

Mitochondrion0.048

Rank 3 · TkAUNG066880 · TK1151

Cell membrane0.042

Rank 4 · TkAUNG066880 · TK1151

Endoplasmic reticulum0.031

Rank 5 · TkAUNG066880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10584Proteasome_A_N4-26 aa

PF00227Proteasome27-210 aa

PF21443G3P_pilus-bind47-90 aa

PF06892Phage_CP7679-104 aa

PF21443G3P_pilus-bind141-162 aa

PF06892Phage_CP76190-232 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG066880	`PF10584`	Proteasome_A_N	4	26	3.3e-14	52.9
TkAUNG066880	`PF00227`	Proteasome	27	210	5.4e-55	186.7
TkAUNG066880	`PF21443`	G3P_pilus-bind	47	90	0.2	12.6
TkAUNG066880	`PF06892`	Phage_CP76	79	104	0.047	14.3
TkAUNG066880	`PF21443`	G3P_pilus-bind	141	162	0.2	12.6
TkAUNG066880	`PF06892`	Phage_CP76	190	232	0.047	14.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O24616`	Arabidopsis thaliana	sp\|O24616\|PSA7B_ARATH Proteasome subunit alpha type-7-B	92.400%	Swiss-Prot	High
`P30186`	Arabidopsis thaliana	sp\|P30186\|PSA7A_ARATH Proteasome subunit alpha type-7-A	92.000%	Swiss-Prot	High
`A2YXU2`	Oryza sativa subsp. indica	sp\|A2YXU2\|PSA7A_ORYSI Proteasome subunit alpha type-7-A	92.000%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card