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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG066840
Reference: TK1151 Chr: ChrUn Coordinates: 19401987-19403384 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1398 bp · TkAUNG066840|TK1151|cDNA

ATGCACACCCTTCCCAAACTAAGATGTCTATCTCTGTTACAACATTGCAAATCATCATCACCAACAAACCATATCACGCAAATTCACTCTCAAATCATATCCAACGGCCTCACACAATCACCCTCCATCGCTGCCCAATTGATCGAACGTTACTGTGCATCATCTGCTCCATATAGCACCAATTACGCCCGCCTCATCGTCACCCAATTCTACCGTCACGACGATAAACGCAATCCATATCTCTTGAATGTTCTGATTCG...

CDS

Download CDS FASTA

1398 bp · TkAUNG066840|TK1151|CDS

ATGCACACCCTTCCCAAACTAAGATGTCTATCTCTGTTACAACATTGCAAATCATCATCACCAACAAACCATATCACGCAAATTCACTCTCAAATCATATCCAACGGCCTCACACAATCACCCTCCATCGCTGCCCAATTGATCGAACGTTACTGTGCATCATCTGCTCCATATAGCACCAATTACGCCCGCCTCATCGTCACCCAATTCTACCGTCACGACGATAAACGCAATCCATATCTCTTGAATGTTCTGATTCG...

Protein

Download Protein FASTA

465 aa · TkAUNG066840|TK1151|PROTEIN

MHTLPKLRCLSLLQHCKSSSPTNHITQIHSQIISNGLTQSPSIAAQLIERYCASSAPYSTNYARLIVTQFYRHDDKRNPYLLNVLIRCAPPSDSILVFADWVSKTILNFDDFTYIFVLGACARRARTLREGIQIHSRVIKHGFLSNIMLQTTLIHFYVNQYAFPLAKKVFDEMHVRTPATWNSLISGYCSKAEHSRDGLLLFMDMLSGNCGVNINPNDTTMVCILSAVSRLGSLKTGATIHSYITKTIPNIEKDVYIGTG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG066840
TK1151 IDTkAUNG066840
OH-1004 IDLXL04_007293
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 99.359
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG066840
LocationChrUn:19401987-19403384 (+)
DescriptionSimilar to PCMP-E93: Pentatricopeptide repeat-containing protein At3g18970
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g18970 Pentatricopeptide repeat-containing protein At3g18970. No verified direct reference in this release
At1g31920 Pentatricopeptide repeat-containing protein At1g31920. No verified direct reference in this release
At3g47530 Pentatricopeptide repeat-containing protein At3g47530. No verified direct reference in this release
At5g43790 Pentatricopeptide repeat-containing protein At5g43790. No verified direct reference in this release
At1g74630 Pentatricopeptide repeat-containing protein At1g74630. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007293 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G31920
ath:AT1G74630
ath:AT3G18970
ath:AT3G47530
ath:AT5G43790
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.662
Rank 1 · TkAUNG066840 · TK1151
Plastid0.142
Rank 2 · TkAUNG066840 · TK1151
Nucleus0.050
Rank 3 · TkAUNG066840 · TK1151
Cytoplasm0.032
Rank 4 · TkAUNG066840 · TK1151
Cell membrane0.005
Rank 5 · TkAUNG066840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N12-52 aa
PF13041PPR_2109-123 aa
PF13812PPR_3113-121 aa
PF17177PPR_long113-175 aa
PF13812PPR_3140-174 aa
PF13041PPR_2150-174 aa
PF01535PPR151-174 aa
PF22330Rib_mS39_PPR165-189 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG066840PF29070MSC6_N12520.0008419.3
TkAUNG066840PF13041PPR_21091231.2e-2590.0
TkAUNG066840PF13812PPR_31131214.9e-1246.5
TkAUNG066840PF17177PPR_long1131750.0002221.4
TkAUNG066840PF13812PPR_31401744.9e-1246.5
TkAUNG066840PF13041PPR_21501741.2e-2590.0
TkAUNG066840PF01535PPR1511741.1e-2588.7
TkAUNG066840PF22330Rib_mS39_PPR1651890.008516.6
TkAUNG066840PF12854PPR_11661733.8e-1762.4
TkAUNG066840PF13041PPR_21792271.2e-2590.0
TkAUNG066840PF01535PPR1801911.1e-2588.7
TkAUNG066840PF12854PPR_11801913.8e-1762.4
TkAUNG066840PF29070MSC6_N2142810.0008419.3
TkAUNG066840PF00884Sulfatase2383330.2411.4
TkAUNG066840PF13812PPR_32502854.9e-1246.5
TkAUNG066840PF13041PPR_22592971.2e-2590.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LJ69Arabidopsis thalianasp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g1897042.900%Swiss-ProtMedium
Q9C6T2Arabidopsis thalianasp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g3192034.900%Swiss-ProtMedium
Q9SN85Arabidopsis thalianasp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g4753033.300%Swiss-ProtMedium
Q9FG85Arabidopsis thalianasp|Q9FG85|PP415_ARATH Pentatricopeptide repeat-containing protein At5g4379033.600%Swiss-ProtMedium
Q9CA54Arabidopsis thalianasp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g7463030.300%Swiss-ProtMedium

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