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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG066150
Reference: TK1151 Chr: ChrUn Coordinates: 19245318-19246415 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

975 bp · TkAUNG066150|TK1151|cDNA

ATGTCTGATAGAAATGTGGTGGCATGGACTGCCATGGTTGCTGGGTACATGAGAGATGGGAAAGTGGGGAATGCTATTTTACTTTTTGAAGAGATGCCAGAGGAGATTCGTGATACGCCATTTTGGAATTGTATTATTGCAGGGTGGCATAGTGGAGAGTTGCAGGTTGGGAAGTGCATTCATGGATACATATATAGAAACGGACTTCATATGGATTTGTTTGTTGTGAACGGCTTGATTGATATGTATGGCAAATGTGG...

CDS

Download CDS FASTA

975 bp · TkAUNG066150|TK1151|CDS

ATGTCTGATAGAAATGTGGTGGCATGGACTGCCATGGTTGCTGGGTACATGAGAGATGGGAAAGTGGGGAATGCTATTTTACTTTTTGAAGAGATGCCAGAGGAGATTCGTGATACGCCATTTTGGAATTGTATTATTGCAGGGTGGCATAGTGGAGAGTTGCAGGTTGGGAAGTGCATTCATGGATACATATATAGAAACGGACTTCATATGGATTTGTTTGTTGTGAACGGCTTGATTGATATGTATGGCAAATGTGG...

Protein

Download Protein FASTA

324 aa · TkAUNG066150|TK1151|PROTEIN

MSDRNVVAWTAMVAGYMRDGKVGNAILLFEEMPEEIRDTPFWNCIIAGWHSGELQVGKCIHGYIYRNGLHMDLFVVNGLIDMYGKCGSFEKSRIVFDKSAEINLTSWNSLINCYALHGRCHEAINIFENVLKHEDELRPDGVTFVGLLNACTHGGLVVEGCHYYDMMIKDYGIEPHIEHYGCLIDLLGRSGQFEEAMEVVKGMRIPPDEVVWGSLLNGCKIHRRTDLAEFAVKKLIEINPNNGGYRAMLANLYGEMGKWD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG066150
TK1151 IDTkAUNG066150
OH-1004 IDLXL04_025777
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)48.300
Protein coverage (%)TK1151 96.296 / OH-1004 22.676
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG066150
LocationChrUn:19245318-19246415 (-)
DescriptionSimilar to LHT1: Lysine histidine transporter 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g33350 Pentatricopeptide repeat-containing protein At1g33350. No verified direct reference in this release
At3g46790 Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. No verified direct reference in this release
At4g33990 Pentatricopeptide repeat-containing protein At4g33990. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release
At4g18750 Plays a major role in single RNA editing events in chloroplasts.
Identification of two pentatricopeptide repeat genes required for RNA editing and zinc binding by C-terminal cytidine deaminase-like domains.2013 · DOI: 10.1074/jbc.m113.485755

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025777 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0003333 amino acid transmembrane transport Biological Process
GO:0006952 defense response Biological Process
GO:0016556 mRNA modification Biological Process
GO:0043090 amino acid import Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0016020 membrane Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0015171 amino acid transmembrane transporter activity Molecular Function
GO:0015172 acidic amino acid transmembrane transporter activity Molecular Function
KEGG gene cross-reference
ath:AT1G24400
ath:AT1G33350
ath:AT1G48640
ath:AT1G67640
ath:AT5G40780
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.641
Rank 1 · TkAUNG066150 · TK1151
Plastid0.196
Rank 2 · TkAUNG066150 · TK1151
Nucleus0.056
Rank 3 · TkAUNG066150 · TK1151
Cytoplasm0.033
Rank 4 · TkAUNG066150 · TK1151
Peroxisome0.006
Rank 5 · TkAUNG066150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_24-34 aa
PF12854PPR_14-32 aa
PF13812PPR_35-34 aa
PF01535PPR7-34 aa
PF13428TPR_147-32 aa
PF13176TPR_79-31 aa
PF23276TPR_2410-34 aa
PF29070MSC6_N14-46 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG066150PF13041PPR_24345.1e-2588.0
TkAUNG066150PF12854PPR_14323.9e-2175.2
TkAUNG066150PF13812PPR_35343.4e-0937.4
TkAUNG066150PF01535PPR7342e-29100.4
TkAUNG066150PF13428TPR_147322.3e-0731.5
TkAUNG066150PF13176TPR_79316e-0523.5
TkAUNG066150PF23276TPR_2410340.0002121.9
TkAUNG066150PF29070MSC6_N14460.002617.6
TkAUNG066150PF07719TPR_216312.6e-0524.7
TkAUNG066150PF14559TPR_1918342.9e-0731.4
TkAUNG066150PF13041PPR_238495.1e-2588.0
TkAUNG066150PF12921ATP13601070.005917.2
TkAUNG066150PF12854PPR_167913.9e-2175.2
TkAUNG066150PF18768RNPP_C69960.003717.5
TkAUNG066150PF13041PPR_272975.1e-2588.0
TkAUNG066150PF01535PPR76982e-29100.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C501Arabidopsis thalianasp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g3335047.900%Swiss-ProtMedium
Q9STF3Arabidopsis thalianasp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein CRR2, chloroplastic41.400%Swiss-ProtMedium
O81767Arabidopsis thalianasp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g3399037.000%Swiss-ProtMedium
Q9LN01Arabidopsis thalianasp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070, chloroplastic39.100%Swiss-ProtMedium
Q9SN39Arabidopsis thalianasp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein DOT4, chloroplastic37.900%Swiss-ProtMedium

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