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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG066110
Reference: TK1151 Chr: ChrUn Coordinates: 19213755-19228268 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2115 bp · TkAUNG066110|TK1151|cDNA

ATGGCGAAATTGCCCATACTCCAATCCGAAGATAAAATTGTGGAAACAGTGGAGAAAAATCCGGTGCTGGTGGTAATAGGAGAAACTGGTTCTGGGAAAAGCACGCAGCTATCTCAAATTCTTCACAGAAGAGGATATACAAAATCTGGGTGCATAGCTGTAACTCAGCCGCGAAGGGTTGCTGCTGTTTCTGTATCGAGACGTGTTGCACAAGAACTCAATGTTAAACTTGGGGAGGAAGTAGGTTATGCCATACGCTT...

CDS

Download CDS FASTA

3057 bp · TkAUNG066110|TK1151|CDS

ATGGCGAAATTGCCCATACTCCAATCCGAAGATAAAATTGTGGAAACAGTGGAGAAAAATCCGGTGCTGGTGGTAATAGGAGAAACTGGTTCTGGGAAAAGCACGCAGCTATCTCAAATTCTTCACAGAAGAGGATATACAAAATCTGGGTGCATAGCTGTAACTCAGCCGCGAAGGGTTGCTGCTGTTTCTGTATCGAGACGTGTTGCACAAGAACTCAATGTTAAACTTGGGGAGGAAGTAGGTTATGCCATACGCTT...

Protein

Download Protein FASTA

1018 aa · TkAUNG066110|TK1151|PROTEIN

MAKLPILQSEDKIVETVEKNPVLVVIGETGSGKSTQLSQILHRRGYTKSGCIAVTQPRRVAAVSVSRRVAQELNVKLGEEVGYAIRFEDRTSERTVIKYLTDGVLLRESLSNPELSQYSVIILDEAHERSLNTDILLGLMKRLIKLRTSNLKVLITSATLDGEKVSKFFFDCPILNVPGKLFPVEIQHSSEKPKSYIEASLKTAMDVHVREPEGDVLIFMTGQDDIEKLVSKMEQRIQNLEEGSCMDAIILPLHGSLPPE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG066110
TK1151 IDTkAUNG066110
OH-1004 IDLXL04_011666
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)81.300
Protein coverage (%)TK1151 63.851 / OH-1004 42.328
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG066110
LocationChrUn:19213755-19228268 (+)
DescriptionSimilar to URE: Urease
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g27900 May be involved in pre-mRNA splicing. No verified direct reference in this release
At3g26560 May be involved in pre-mRNA splicing. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011666 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0043419 urea catabolic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0035550 urease complex Cellular Component
GO:0009039 urease activity Molecular Function
GO:0016151 nickel cation binding Molecular Function
GO:0090729 toxin activity Molecular Function
KEGG gene cross-reference
ath:AT1G67550
gmx:547672
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.201
Rank 1 · TkAUNG066110 · TK1151
Endoplasmic reticulum0.197
Rank 2 · TkAUNG066110 · TK1151
Mitochondrion0.184
Rank 3 · TkAUNG066110 · TK1151
Nucleus0.171
Rank 4 · TkAUNG066110 · TK1151
Peroxisome0.106
Rank 5 · TkAUNG066110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25199nSTAND_NTPase58-43 aa
PF01580FtsK_SpoIIIE9-40 aa
PF20720nSTAND311-44 aa
PF20703nSTAND111-36 aa
PF13245AAA_1912-130 aa
PF25201nSTAND612-74 aa
PF00931NB-ARC12-75 aa
PF00270DEAD13-167 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG066110PF25199nSTAND_NTPase58430.0006120.4
TkAUNG066110PF01580FtsK_SpoIIIE9400.08813.0
TkAUNG066110PF20720nSTAND311440.00617.0
TkAUNG066110PF20703nSTAND111360.1712.2
TkAUNG066110PF13245AAA_19121301.4e-0526.0
TkAUNG066110PF25201nSTAND612740.02415.4
TkAUNG066110PF00931NB-ARC12750.112.9
TkAUNG066110PF00270DEAD131671.9e-0731.7
TkAUNG066110PF00005ABC_tran16530.004718.2
TkAUNG066110PF01637ATPase_2171460.005717.2
TkAUNG066110PF24883NPHP3_N181570.01716.1
TkAUNG066110PF13604AAA_30191270.0004120.9
TkAUNG066110PF13555AAA_2919360.1812.4
TkAUNG066110PF00437T2SSE20420.1411.5
TkAUNG066110PF13401AAA_22211334.9e-0834.1
TkAUNG066110PF13191AAA_16211410.01117.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q93Y16Arabidopsis thalianasp|Q93Y16|DEAH4_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH475.500%Swiss-ProtHigh
Q38953Arabidopsis thalianasp|Q38953|DEAH5_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH546.400%Swiss-ProtMedium

JBrowse

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