TkAUNG064060 | RubberDandelionOmics

Gene overview

TkAUNG064060

Reference: TK1151 Chr: ChrUn Coordinates: 18546129-18549383 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1518 bp · TkAUNG064060|TK1151|cDNA

ATGGCGAACCCTCCAAAGCCATGGAAAGCAGAGTATGCAAAGTCATCAAGATCTTCATGCAAGACTTGCAAGATTCCCATTGATAAGGAGATTCTCAGGCTTGGCAAGATGGTTCAGGCCACTCAGTTTGATGGTTTCATGCCTATGTGGAACCATGCTACTTGCATCTTAAGGAAAGCGAATCAGATAAAAGCAGTTGATGATGTTGAAGGGTTAGAATTGCTTCGCTGGGAGGATCAGCAGAAGATCAGGAAGTATGT...

CDS

Download CDS FASTA

1518 bp · TkAUNG064060|TK1151|CDS

ATGGCGAACCCTCCAAAGCCATGGAAAGCAGAGTATGCAAAGTCATCAAGATCTTCATGCAAGACTTGCAAGATTCCCATTGATAAGGAGATTCTCAGGCTTGGCAAGATGGTTCAGGCCACTCAGTTTGATGGTTTCATGCCTATGTGGAACCATGCTACTTGCATCTTAAGGAAAGCGAATCAGATAAAAGCAGTTGATGATGTTGAAGGGTTAGAATTGCTTCGCTGGGAGGATCAGCAGAAGATCAGGAAGTATGT...

Protein

Download Protein FASTA

505 aa · TkAUNG064060|TK1151|PROTEIN

MANPPKPWKAEYAKSSRSSCKTCKIPIDKEILRLGKMVQATQFDGFMPMWNHATCILRKANQIKAVDDVEGLELLRWEDQQKIRKYVDGGAAVASNSSTSAVVECGVEVSQTSRATCRGCSQKIMKGELRISTKPEGQARGLSWNHAKCYMETSSAPQLEKFSGWDSLSPSDRATLLSFVKKNPSTQTTSKGTKVEHEEKEELLQQSTSKAGSKRKKTLESDQKSKIVKAEGTASSKISSASRKTNELKDENPKACVLEN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG064060`
TK1151 ID	TkAUNG064060
OH-1004 ID	LXL04_036896
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	53.100
Protein coverage (%)	TK1151 97.624 / OH-1004 50.199 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG064060

Location ChrUn:18546129-18549383 (+)

Description Similar to PARP1: Poly [ADP-ribose] polymerase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g31320`	Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0413700`	Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036896 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000012 single strand break repair Biological Process

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0000723 telomere maintenance Biological Process

GO:0006281 DNA repair Biological Process

GO:0006302 double-strand break repair Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006366 transcription by RNA polymerase II Biological Process

GO:0006974 DNA damage response Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0007005 mitochondrion organization Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0010332 response to gamma radiation Biological Process

KEGG gene cross-reference

ath:AT2G31320

bta:286764

dosa:Os07g0413700

hsa:142

zma:103647201

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.904

Rank 1 · TkAUNG064060 · TK1151

Cytoplasm0.193

Rank 2 · TkAUNG064060 · TK1151

Mitochondrion0.033

Rank 3 · TkAUNG064060 · TK1151

Cell membrane0.028

Rank 4 · TkAUNG064060 · TK1151

Endoplasmic reticulum0.016

Rank 5 · TkAUNG064060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00645zf-PARP11-87 aa

PF08063Zn_ribbon_PADR119-24 aa

PF00645zf-PARP108-176 aa

PF21728PADR1_N258-314 aa

PF08063Zn_ribbon_PADR1315-355 aa

PF00533BRCT449-485 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG064060	`PF00645`	zf-PARP	11	87	2.4e-36	125.0
TkAUNG064060	`PF08063`	Zn_ribbon_PADR1	19	24	3.8e-15	56.1
TkAUNG064060	`PF00645`	zf-PARP	108	176	2.4e-36	125.0
TkAUNG064060	`PF21728`	PADR1_N	258	314	7.7e-20	71.8
TkAUNG064060	`PF08063`	Zn_ribbon_PADR1	315	355	3.8e-15	56.1
TkAUNG064060	`PF00533`	BRCT	449	485	0.018	15.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZP54`	Arabidopsis thaliana	sp\|Q9ZP54\|PARP1_ARATH Poly [ADP-ribose] polymerase 1	53.100%	Swiss-Prot	High
`Q7EYV7`	Oryza sativa subsp. japonica	sp\|Q7EYV7\|PARP1_ORYSJ Poly [ADP-ribose] polymerase 1	48.400%	Swiss-Prot	Medium

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