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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG056910
Reference: TK1151 Chr: ChrUn Coordinates: 16207222-16208999 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1458 bp · TkAUNG056910|TK1151|cDNA

CCTGGACTTGATTAAAAAATGTCATAATTATATGAACCAAAAATATAATTTACTTAAATAATAAGAGAATGTATGTACGTGGACAAAGTTGGTTTTAAAAATAAGCCACGTAGGACCGAAGCAATAGATCACACCTCACTTGCCCGAATTTGATTAAAATAAAAATAAAAAAGAAATGTCTATTGAAAAACATGAAATAGTTAAATGTTCGATTTTGGTTAACCTGCTTGGAACTCCAATGTCGAAACCCTAAATTCAAT...

CDS

Download CDS FASTA

1014 bp · TkAUNG056910|TK1151|CDS

ATGGTCAGTCTTGATCTTATTCATGTGCTTTTTTTCTTTTTCCTTTATTCGGTTCTAGAAGTACTCATCGCAACAATAATGGAAGACTACAGATTGATCGACACAGAAGAATATCTTGAAGATTTCGAAGATGAAGAGGAAGTCGAAGAGGGAGAGGAAGATGAAGAGGGGGAAGAATTGGGGGATTTGGTTCCGAGGGTGATACCTATCAGTTCAATTGAAGATGAGGATTATGAGGACGAAGACGAAGATGAAGATGA...

Protein

Download Protein FASTA

337 aa · TkAUNG056910|TK1151|PROTEIN

MVSLDLIHVLFFFFLYSVLEVLIATIMEDYRLIDTEEYLEDFEDEEEVEEGEEDEEGEELGDLVPRVIPISSIEDEDYEDEDEDEDEDEDEDEDEDGDYWDEDEDLDEDYWDDDEDEELDEFIPVEITSHNVSTSISDGRSVQQAVAIADGLLHDLNDLEPREENSGNQENGESLNRGEIDGLFCPICFAAWTSGGSHQICCLPCGHIYGFSCINKWLQLRRSSGKCPQCKVFCTLKDVRVLYASRLCVADEELHKKVRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG056910
TK1151 IDTkAUNG056910
OH-1004 IDLXL04_005123
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG056910
LocationChrUn:16207222-16208999 (-)
DescriptionSimilar to RFWD3: E3 ubiquitin-protein ligase RFWD3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005123 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006974 DNA damage response Biological Process
GO:0010212 response to ionizing radiation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031297 replication fork processing Biological Process
GO:0031571 mitotic G1 DNA damage checkpoint signaling Biological Process
GO:0036297 interstrand cross-link repair Biological Process
GO:2000001 regulation of DNA damage checkpoint Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
aml:100478259
hsa:55159
mmu:234736
xla:108714145
xla:108715474
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.725
Rank 1 · TkAUNG056910 · TK1151
Cytoplasm0.404
Rank 2 · TkAUNG056910 · TK1151
Cell membrane0.032
Rank 3 · TkAUNG056910 · TK1151
Mitochondrion0.030
Rank 4 · TkAUNG056910 · TK1151
Endoplasmic reticulum0.028
Rank 5 · TkAUNG056910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15227zf-C3HC4_4183-188 aa
PF13920zf-C3HC4_3184-231 aa
PF11793FANCL_C184-233 aa
PF13639zf-RING_2185-231 aa
PF00097zf-C3HC4185-230 aa
PF13445zf-RING_UBOX185-228 aa
PF12861zf-ANAPC11185-237 aa
PF13923zf-C3HC4_2185-230 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG056910PF15227zf-C3HC4_41831880.03914.8
TkAUNG056910PF13920zf-C3HC4_31842310.04214.4
TkAUNG056910PF11793FANCL_C1842332.69.1
TkAUNG056910PF13639zf-RING_21852314.1e-0834.1
TkAUNG056910PF00097zf-C3HC41852300.0001422.4
TkAUNG056910PF13445zf-RING_UBOX1852280.0001922.1
TkAUNG056910PF12861zf-ANAPC111852370.0006520.4
TkAUNG056910PF13923zf-C3HC4_21852300.002818.1
TkAUNG056910PF14634zf-RING_51852310.03314.9
TkAUNG056910PF17123zf-RING_111852140.5310.7
TkAUNG056910PF14570zf-RING_41852311.59.4
TkAUNG056910PF29452FAR1_N1992340.7410.6
TkAUNG056910PF17120zf-RING_161992302.48.6
TkAUNG056910PF12678zf-rbx12002310.01616.2
TkAUNG056910PF15227zf-C3HC4_42022300.03914.8
TkAUNG056910PF03961FapA2523145.67.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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