RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG055820
Reference: TK1151 Chr: ChrUn Coordinates: 15875103-15886005 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2853 bp · TkAUNG055820|TK1151|cDNA

AAAAGAATGAGGGCACCATCTTAATTTTCAGTTTACATTTTAATTTTAGTATAAGAAAAGATTGGGTTTGGAAGTTTCATTGAGAGCGTAGTGTGTATCCGCCCCTGGTTTTAAATGATGAAAAGATGTCGATAACTAGTTTGAGACTTTTGTTATCCCTCACGCTCATCTTCTCCACGGTTCTATCATTGGAAGAAAATGGTACATTTCCAGCAAAAGCCGGATATCTTCCTCGACACGAAGTGGATGCTCTTCATCAA...

CDS

Download CDS FASTA

2307 bp · TkAUNG055820|TK1151|CDS

ATGTCGATAACTAGTTTGAGACTTTTGTTATCCCTCACGCTCATCTTCTCCACGGTTCTATCATTGGAAGAAAATGGTACATTTCCAGCAAAAGCCGGATATCTTCCTCGACACGAAGTGGATGCTCTTCATCAAATAGCTGAACAATTGGGTAAACGTGACTGGAATTTTAGCCTAAACCCATGTGATGGAAATACAAGTTGGTTAACACCGTATAACCCGGAAATACCTCAATATAACAATAGTGTCGAGTGTAGCTG...

Protein

Download Protein FASTA

769 aa · TkAUNG055820|TK1151|PROTEIN

MSITSLRLLLSLTLIFSTVLSLEENGTFPAKAGYLPRHEVDALHQIAEQLGKRDWNFSLNPCDGNTSWLTPYNPEIPQYNNSVECSCSYPGGVCHVVSVRLKGQNLDGSLPPSLANLTYITTIDLNRNYLNGTIPLEWASMKLEYLSVEVNRLSGKIPNHLGNISSLVYINLENNMFSETVPAELGKLENLEMLILSANNLSGELPKELNNLTNLTRLRLSSNNFTGKFPELKNWGKLETLEIQASGLEGPIPESLSRLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG055820
TK1151 IDTkAUNG055820
OH-1004 IDLXL04_010778
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.000
Protein coverage (%)TK1151 100.000 / OH-1004 73.720
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG055820
LocationChrUn:15875103-15886005 (+)
DescriptionSimilar to At1g07650: Probable LRR receptor-like serine/threonine-protein kinase At1g07650
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07650 Probable LRR receptor-like serine/threonine-protein kinase At1g07650. No verified direct reference in this release
At3g14840 Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840. No verified direct reference in this release
At1g53430 Probable LRR receptor-like serine/threonine-protein kinase At1g53430. No verified direct reference in this release
At1g53440 Probable LRR receptor-like serine/threonine-protein kinase At1g53440. No verified direct reference in this release
At1g29720 Probable LRR receptor-like serine/threonine-protein kinase At1g29720. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010778 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009861 jasmonic acid and ethylene-dependent systemic resistance Biological Process
GO:0031667 response to nutrient levels Biological Process
GO:0045088 regulation of innate immune response Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0016020 membrane Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
KEGG gene cross-reference
ath:AT1G07650
ath:AT1G29750
ath:AT1G53430
ath:AT1G53440
ath:AT3G14840
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.756
Rank 1 · TkAUNG055820 · TK1151
Endoplasmic reticulum0.090
Rank 2 · TkAUNG055820 · TK1151
Cytoplasm0.086
Rank 3 · TkAUNG055820 · TK1151
Lysosome / Vacuole0.062
Rank 4 · TkAUNG055820 · TK1151
Extracellular0.055
Rank 5 · TkAUNG055820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20209DUF657094-126 aa
PF00560LRR_197-117 aa
PF24141LRR_ComC98-143 aa
PF13855LRR_899-153 aa
PF12799LRR_4106-134 aa
PF00560LRR_1120-140 aa
PF24048LRR_NXF1-5120-167 aa
PF13855LRR_8121-176 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG055820PF20209DUF6570941260.6611.1
TkAUNG055820PF00560LRR_1971172.4e-2377.9
TkAUNG055820PF24141LRR_ComC981436.7e-0730.0
TkAUNG055820PF13855LRR_8991532.5e-1866.3
TkAUNG055820PF12799LRR_41061342.8e-1763.0
TkAUNG055820PF00560LRR_11201402.4e-2377.9
TkAUNG055820PF24048LRR_NXF1-51201670.01116.1
TkAUNG055820PF13855LRR_81211762.5e-1866.3
TkAUNG055820PF23598LRR_141393381.1e-1661.3
TkAUNG055820PF29594LRR_SKP21412002.87.8
TkAUNG055820PF00560LRR_11421632.4e-2377.9
TkAUNG055820PF13855LRR_81422012.5e-1866.3
TkAUNG055820PF12799LRR_41421752.8e-1763.0
TkAUNG055820PF25019LRR_R13L1-DRL211431972.7e-0834.5
TkAUNG055820PF23211LRR_LRWD11592430.01216.0
TkAUNG055820PF23952LRR_EndoS1601991.110.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
C0LGE0Arabidopsis thalianasp|C0LGE0|Y1765_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g0765051.100%Swiss-ProtHigh
C0LGN2Arabidopsis thalianasp|C0LGN2|Y3148_ARATH Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g1484045.200%Swiss-ProtMedium
C0LGG8Arabidopsis thalianasp|C0LGG8|Y5343_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g5343048.400%Swiss-ProtMedium
C0LGG9Arabidopsis thalianasp|C0LGG9|Y5344_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g5344046.900%Swiss-ProtMedium
Q9ASQ6Arabidopsis thalianasp|Q9ASQ6|Y1972_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g2972046.600%Swiss-ProtMedium

JBrowse

View in Genome Browser