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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG055600
Reference: TK1151 Chr: ChrUn Coordinates: 15824356-15829438 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3595 bp · TkAUNG055600|TK1151|cDNA

GAGAGGCATTTGTGCAACTCTCTGTGTCGTTTATATTCACGCTGACAGAAGCACAACGTTTGATTGTTTATGCAACTGCAAGAACAAAATCCTAATTCTTCATCTCCCTACATACCTCGCTGCTGCTGCGTTTTTTCTTCTCAATTTGAATCGCAGATTTAATTCGTTCGATTTGCCATCAGTTCTTGACTCTTTTCGTCGTTTTAACCCCTCGATTCTATGAATTAGGGTTTCTTTTCTTTGGGTTAGCATGTTCGGTT...

CDS

Download CDS FASTA

2865 bp · TkAUNG055600|TK1151|CDS

ATGATTGAACCGATGGTACGATCAAAAATGCCGAATGTTAAACGCTGCAAATTGGAGGAAATTGACGCCGATACGACTGACAATTCGCATTCACATTACCCTTCTGTGGGTTTCACCAAGAAACAAAGAACAAACACCGCGTTCGTGGCAACTGCCGATAAGGAAGCCTGTTTTATCGACTACGAAAACGTCGTTAACGCTTGGTGCACTGGAGTTCCGTGTACCCCTGCCGATTTGAAGTCAAGTTCGAGTTCAATTAA...

Protein

Download Protein FASTA

954 aa · TkAUNG055600|TK1151|PROTEIN

MIEPMVRSKMPNVKRCKLEEIDADTTDNSHSHYPSVGFTKKQRTNTAFVATADKEACFIDYENVVNAWCTGVPCTPADLKSSSSSIKLLKSSRGRLSVCPSRFNDTVIGLWKKENDIDTNIRKRKFPFSDRESVTKKQSMEPKVGQMFSSSSSSATSFGNHISNDSKKARKTTKNVKRKESYTHEDFLTGEIVWAKCSNRFPAWPAIVIDAQQEAPTSVKKARIPNTVCVMFYGYSKRGTRDYAWVKDGMIYPFLEFLER...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG055600
TK1151 IDTkAUNG055600
OH-1004 IDLXL04_010786
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)98.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG055600
LocationChrUn:15824356-15829438 (-)
DescriptionSimilar to ATX3: Histone-lysine N-methyltransferase ATX3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61740 Histone methyltransferase. No verified direct reference in this release
At5g53430 Histone methyltransferase. No verified direct reference in this release
At4g27910 Histone methyltransferase. No verified direct reference in this release
At1g05830 Histone methyltransferase.
The highly similar Arabidopsis homologs of trithorax ATX1 and ATX2 encode proteins with divergent biochemical functions.2008 · DOI: 10.1105/tpc.107.056614
Combinatorial functions of diverse histone methylations in Arabidopsis thaliana flowering time regulation.2014 · DOI: 10.1111/nph.12493

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0134500 Possesses histone H3 methyltransferase activity in vitro.
Trithorax group protein Oryza sativa Trithorax1 controls flowering time in rice via interaction with early heading date3.2014 · DOI: 10.1104/pp.113.228049
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010786 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006338 chromatin remodeling Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006357 regulation of transcription by RNA polymerase II Biological Process
GO:0009294 DNA-mediated transformation Biological Process
GO:0009908 flower development Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0032259 methylation Biological Process
GO:0040029 epigenetic regulation of gene expression Biological Process
GO:0048578 positive regulation of long-day photoperiodism, flowering Biological Process
GO:0000785 chromatin Cellular Component
GO:0005634 nucleus Cellular Component
GO:0009506 plasmodesma Cellular Component
KEGG gene cross-reference
ath:AT1G05830
ath:AT3G61740
ath:AT4G27910
ath:AT5G53430
dosa:Os09g0134500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.899
Rank 1 · TkAUNG055600 · TK1151
Cytoplasm0.152
Rank 2 · TkAUNG055600 · TK1151
Cell membrane0.032
Rank 3 · TkAUNG055600 · TK1151
Mitochondrion0.020
Rank 4 · TkAUNG055600 · TK1151
Endoplasmic reticulum0.014
Rank 5 · TkAUNG055600 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00855PWWP190-282 aa
PF13832zf-HC5HC2H_2344-374 aa
PF13771zf-HC5HC2H346-373 aa
PF13831PHD_2363-370 aa
PF00628PHD363-385 aa
PF01342SAND424-483 aa
PF13771zf-HC5HC2H505-555 aa
PF13832zf-HC5HC2H_2519-555 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG055600PF00855PWWP1902824.8e-1763.0
TkAUNG055600PF13832zf-HC5HC2H_23443741e-28100.4
TkAUNG055600PF13771zf-HC5HC2H3463733.8e-1350.2
TkAUNG055600PF13831PHD_23633702.1e-1350.2
TkAUNG055600PF00628PHD3633850.0001622.3
TkAUNG055600PF01342SAND4244830.003217.8
TkAUNG055600PF13771zf-HC5HC2H5055553.8e-1350.2
TkAUNG055600PF13832zf-HC5HC2H_25195551e-28100.4
TkAUNG055600PF00628PHD5265710.0001622.3
TkAUNG055600PF13831PHD_25385722.1e-1350.2
TkAUNG055600PF13771zf-HC5HC2H5755893.8e-1350.2
TkAUNG055600PF13832zf-HC5HC2H_25796911e-28100.4
TkAUNG055600PF13771zf-HC5HC2H6016923.8e-1350.2
TkAUNG055600PF13831PHD_26376472.1e-1350.2
TkAUNG055600PF00628PHD6376630.0001622.3
TkAUNG055600PF13831PHD_26486622.1e-1350.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M364Arabidopsis thalianasp|Q9M364|ATX3_ARATH Histone-lysine N-methyltransferase ATX348.100%Swiss-ProtMedium
Q8GZ42Arabidopsis thalianasp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX546.700%Swiss-ProtMedium
Q9SUE7Arabidopsis thalianasp|Q9SUE7|ATX4_ARATH Histone-lysine N-methyltransferase ATX448.000%Swiss-ProtMedium
P0CB22Arabidopsis thalianasp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX232.700%Swiss-ProtLow
Q6K431Oryza sativa subsp. japonicasp|Q6K431|TRX1_ORYSJ Histone-lysine N-methyltransferase TRX134.000%Swiss-ProtLow

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