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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG055200
Reference: TK1151 Chr: ChrUn Coordinates: 15738656-15745549 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2817 bp · TkAUNG055200|TK1151|cDNA

ATGATGAAGCCTTTACCATCCATGTTGAATGGTTTTCCTCCTACTTTCAAATTCACTAAAGGAAAACGAGAAGACATCAAATCTACAGTTCAAAACGCCACTGTTATTTCTCCTAGTGATGCCTCTTCAAGTCCATCTATCACTGTTGATCAGTACAATCAATTGATGCAAATGTTCCACAATCACAATCCTCATTCAACCACACCTGTTACAGAAGGAGCCATGAACTCTGGAGATCAACAGATCACATGTGCTCTAAT...

CDS

Download CDS FASTA

2817 bp · TkAUNG055200|TK1151|CDS

ATGATGAAGCCTTTACCATCCATGTTGAATGGTTTTCCTCCTACTTTCAAATTCACTAAAGGAAAACGAGAAGACATCAAATCTACAGTTCAAAACGCCACTGTTATTTCTCCTAGTGATGCCTCTTCAAGTCCATCTATCACTGTTGATCAGTACAATCAATTGATGCAAATGTTCCACAATCACAATCCTCATTCAACCACACCTGTTACAGAAGGAGCCATGAACTCTGGAGATCAACAGATCACATGTGCTCTAAT...

Protein

Download Protein FASTA

938 aa · TkAUNG055200|TK1151|PROTEIN

MMKPLPSMLNGFPPTFKFTKGKREDIKSTVQNATVISPSDASSSPSITVDQYNQLMQMFHNHNPHSTTPVTEGAMNSGDQQITCALIGLCLYTWIHLIPNKAVAMSMIKAFVQLIKTQFSKTIKVIGSDNAYELGSSHEVQQFYSENGIIHQKSTPRTPQQNGIVERKHKHILETARALFFHSGLGIAYWSCCVQTAVHLINLMPSKTIGLKTPSEALYKIKPDLSTLRAFGCLCFVTTSPVGRDKFMPKSQICVFIGYP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG055200
TK1151 IDTkAUNG055200
OH-1004 IDLXL04_022410
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)44.000
Protein coverage (%)TK1151 74.733 / OH-1004 35.564
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG055200
LocationChrUn:15738656-15745549 (-)
DescriptionSimilar to VIII-1: Myosin-1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: P93290 Uncharacterized mitochondrial protein AtMg00240. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022410 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006897 endocytosis Biological Process
GO:0007015 actin filament organization Biological Process
GO:0010082 regulation of root meristem growth Biological Process
GO:0010090 trichome morphogenesis Biological Process
GO:0030048 actin filament-based movement Biological Process
GO:0048467 gynoecium development Biological Process
GO:0048767 root hair elongation Biological Process
GO:0051645 Golgi localization Biological Process
GO:0051646 mitochondrion localization Biological Process
GO:0060151 peroxisome localization Biological Process
GO:0090436 leaf pavement cell development Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G50360
ath:AT3G19960
ath:AT4G27370
ath:AT5G43900
ath:AT5G54280
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.676
Rank 1 · TkAUNG055200 · TK1151
Nucleus0.408
Rank 2 · TkAUNG055200 · TK1151
Mitochondrion0.067
Rank 3 · TkAUNG055200 · TK1151
Peroxisome0.041
Rank 4 · TkAUNG055200 · TK1151
Endoplasmic reticulum0.040
Rank 5 · TkAUNG055200 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00665rve93-159 aa
PF29688TnsB_C122-174 aa
PF13683rve_3148-172 aa
PF14368LTP_2231-241 aa
PF25597SH3_retrovirus233-293 aa
PF14368LTP_2384-429 aa
PF07727RVT_2413-464 aa
PF07727RVT_2489-572 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG055200PF00665rve931590.02415.6
TkAUNG055200PF29688TnsB_C1221740.0006820.2
TkAUNG055200PF13683rve_31481720.08713.3
TkAUNG055200PF14368LTP_22312412.5e-0628.2
TkAUNG055200PF25597SH3_retrovirus2332931.4e-2073.6
TkAUNG055200PF14368LTP_23844292.5e-0628.2
TkAUNG055200PF07727RVT_24134641.3e-28100.9
TkAUNG055200PF07727RVT_24895721.3e-28100.9
TkAUNG055200PF00234Tryp_alpha_amyl7277491.6e-0732.2
TkAUNG055200PF25597SH3_retrovirus7437551.4e-2073.6
TkAUNG055200PF14368LTP_28469262.5e-0628.2
TkAUNG055200PF00234Tryp_alpha_amyl8509361.6e-0732.2
TkAUNG055200PF00665rve8889060.02415.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P93290Arabidopsis thalianasp|P93290|M240_ARATH Uncharacterized mitochondrial protein AtMg0024045.500%Swiss-ProtLow

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