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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG054410
Reference: TK1151 Chr: ChrUn Coordinates: 15506909-15509332 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2133 bp · TkAUNG054410|TK1151|cDNA

ATGCAAAGGCACTGTAAATTCCGGCGTGCTTCGTCCAACAGACGTTTTTGTTCCACCAATCTCCGATCACATTTCTCTGACGTCACCCCTCAAAACACGCAGAGTTGTTATAGCACCATCGCCGCCTCTTCCTCTTCACAATCACCATGGTTTCCATTCATACGCACTGCCATTGCTCGAAACGACTTGTCATTAGGAAAAACCATACACGCTTCGATCATAACCCATGGGCACACCACAGCCGACCGCTTCCTGACCAA...

CDS

Download CDS FASTA

2133 bp · TkAUNG054410|TK1151|CDS

ATGCAAAGGCACTGTAAATTCCGGCGTGCTTCGTCCAACAGACGTTTTTGTTCCACCAATCTCCGATCACATTTCTCTGACGTCACCCCTCAAAACACGCAGAGTTGTTATAGCACCATCGCCGCCTCTTCCTCTTCACAATCACCATGGTTTCCATTCATACGCACTGCCATTGCTCGAAACGACTTGTCATTAGGAAAAACCATACACGCTTCGATCATAACCCATGGGCACACCACAGCCGACCGCTTCCTGACCAA...

Protein

Download Protein FASTA

710 aa · TkAUNG054410|TK1151|PROTEIN

MQRHCKFRRASSNRRFCSTNLRSHFSDVTPQNTQSCYSTIAASSSSQSPWFPFIRTAIARNDLSLGKTIHASIITHGHTTADRFLTNNLINMYSKCGALPSARQLFDVMPQRDLVTWNSILAAYASTCDSHSGNVEEGFRLFRLLLRSSDVSLTKLTLAPVLKLCLMSSYVWASECVHGYSAKVGLESEVFISGALVNIYTKFDKVREARIVFDNMEEHDRDVVLWNVMLKAYVKSGVQEDTFQFLSEFHKNDFVSPDIG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG054410
TK1151 IDTkAUNG054410
OH-1004 IDLXL04_028524
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)87.000
Protein coverage (%)TK1151 98.592 / OH-1004 61.783
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG054410
LocationChrUn:15506909-15509332 (+)
DescriptionSimilar to PCMP-H53: Pentatricopeptide repeat-containing protein At4g33170
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At1g18485 Pentatricopeptide repeat-containing protein At1g18485. No verified direct reference in this release
At5g09950 Putative pentatricopeptide repeat-containing protein At5g09950. No verified direct reference in this release
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At3g63370 Involved in RNA editing event in chloroplasts.
A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites.2009 · DOI: 10.1105/tpc.109.071472

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_028524 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT4G33170
ath:AT5G09950
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.660
Rank 1 · TkAUNG054410 · TK1151
Plastid0.195
Rank 2 · TkAUNG054410 · TK1151
Nucleus0.048
Rank 3 · TkAUNG054410 · TK1151
Cytoplasm0.033
Rank 4 · TkAUNG054410 · TK1151
Cell membrane0.006
Rank 5 · TkAUNG054410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10602RPN743-65 aa
PF23276TPR_2474-116 aa
PF13041PPR_285-112 aa
PF10602RPN785-107 aa
PF29070MSC6_N86-126 aa
PF01535PPR87-113 aa
PF12854PPR_187-109 aa
PF13812PPR_3112-129 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG054410PF10602RPN743650.0215.3
TkAUNG054410PF23276TPR_24741168.4e-0832.9
TkAUNG054410PF13041PPR_2851122.3e-73242.8
TkAUNG054410PF10602RPN7851070.0215.3
TkAUNG054410PF29070MSC6_N861269.6e-1452.0
TkAUNG054410PF01535PPR871136.1e-60196.1
TkAUNG054410PF12854PPR_1871094.6e-31106.9
TkAUNG054410PF13812PPR_31121295.2e-2484.8
TkAUNG054410PF13041PPR_21131432.3e-73242.8
TkAUNG054410PF12854PPR_11131244.6e-31106.9
TkAUNG054410PF01535PPR1151466.1e-60196.1
TkAUNG054410PF17177PPR_long1161651.8e-1041.3
TkAUNG054410PF26713TPR_RPO41_N1201800.0004120.7
TkAUNG054410PF13041PPR_21952182.3e-73242.8
TkAUNG054410PF01535PPR1952196.1e-60196.1
TkAUNG054410PF13812PPR_31952355.2e-2484.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317045.000%Swiss-ProtMedium
Q0WN60Arabidopsis thalianasp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g1848529.700%Swiss-ProtLow
Q9FIB2Arabidopsis thalianasp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g0995032.300%Swiss-ProtMedium
Q9SVP7Arabidopsis thalianasp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g1365029.600%Swiss-ProtLow
Q9M1V3Arabidopsis thalianasp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370, chloroplastic30.200%Swiss-ProtMedium

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