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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG051920
Reference: TK1151 Chr: ChrUn Coordinates: 14854691-14858112 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1524 bp · TkAUNG051920|TK1151|cDNA

AAAATACCAAATATGCCAAAACCCTATAATTCAATTTGTATGACGACTTTACAGATGGACACAGCGATTACAGGCTAACCCTTCTCTCTCTCTCTCTCTCTCATCACACTCTTCTTTCCCCCAATCTGTTTGTGAAACCCTAGGAAGACATACCTACATGCTTGCCCTTGCCCTGTAATCTGCGTCATTCTTGTTTTCTCAAAAATCCACTTCAGGGTTTTCAACTTGTTTCTCTGAAAAACCAATAAGACACTTCTCAG...

CDS

Download CDS FASTA

822 bp · TkAUNG051920|TK1151|CDS

ATGGCGAACCCGGATTTGCAAATGAACGTTCAAATGGAGCAGATCCATGGAGAAATCCGTGACAATTTTCGAGCCCTCGCCAATGGGTTTCAGAAGCTGGACAAGATTAAAGATTCCACCAGACAAAGTAAACAATTGGAGGATCTTACAGGAAAGATGAGAGAGTGTAAAAGGTTGATCAAAGAGTTTGACCGTGAAATCAAAGAGGAGGAAAGTAAAAATCCTCCAGAAGTCAGCAAGAAACTCAATGATGAGAAGCA...

Protein

Download Protein FASTA

273 aa · TkAUNG051920|TK1151|PROTEIN

MANPDLQMNVQMEQIHGEIRDNFRALANGFQKLDKIKDSTRQSKQLEDLTGKMRECKRLIKEFDREIKEEESKNPPEVSKKLNDEKQSMIKELNSYVALRKTYQSTLGNKRVELFDMGAGASEPMAEDNAQVASEMSNQELVHAGRQTMNETDQAIERSKQVVQQTVEVGTQTAANLKGQTDQMGRIVNELDTIQFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIIVKIVNPHNKDIRDIPGLAPPAPASRR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG051920
TK1151 IDTkAUNG051920
OH-1004 IDLXL04_015338
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG051920
LocationChrUn:14854691-14858112 (-)
DescriptionSimilar to NPSN13: Novel plant SNARE 13
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g17440 Vesicle trafficking protein that functions in the secretory pathway. No verified direct reference in this release
At1g48240 Vesicle trafficking protein that functions in the secretory pathway. No verified direct reference in this release
At2g35190 t-SNARE involved in diverse vesicle trafficking and membrane fusion processes, including cell plate formation. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015338 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000911 cytokinesis by cell plate formation Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0006891 intra-Golgi vesicle-mediated transport Biological Process
GO:0006896 Golgi to vacuole transport Biological Process
GO:0006906 vesicle fusion Biological Process
GO:0015031 protein transport Biological Process
GO:0016236 macroautophagy Biological Process
GO:0042147 retrograde transport, endosome to Golgi Biological Process
GO:0048280 vesicle fusion with Golgi apparatus Biological Process
GO:1903076 regulation of protein localization to plasma membrane Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G48240
ath:AT2G35190
ath:AT3G17440
bta:780809
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.351
Rank 1 · TkAUNG051920 · TK1151
Cell membrane0.336
Rank 2 · TkAUNG051920 · TK1151
Golgi apparatus0.251
Rank 3 · TkAUNG051920 · TK1151
Lysosome / Vacuole0.228
Rank 4 · TkAUNG051920 · TK1151
Endoplasmic reticulum0.143
Rank 5 · TkAUNG051920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29876VAB210-68 aa
PF00015MCPsignal13-80 aa
PF28963BLOC1S413-47 aa
PF07303Occludin_ELL14-65 aa
PF17111PigL_N18-107 aa
PF25464DUF790018-89 aa
PF03462PCRF19-94 aa
PF07851TMEM120A-B21-97 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG051920PF29876VAB210684.77.9
TkAUNG051920PF00015MCPsignal13800.0001622.3
TkAUNG051920PF28963BLOC1S413470.4611.4
TkAUNG051920PF07303Occludin_ELL14650.5711.7
TkAUNG051920PF17111PigL_N181070.08912.9
TkAUNG051920PF25464DUF790018897.08.0
TkAUNG051920PF03462PCRF19943.88.0
TkAUNG051920PF07851TMEM120A-B21970.2311.4
TkAUNG051920PF03908Sec2022651.9e-0731.6
TkAUNG051920PF02185HR125730.1512.7
TkAUNG051920PF04100Vps53_N30718.86.0
TkAUNG051920PF03233Cauli_AT34703.18.5
TkAUNG051920PF20936GCIP_C35850.0415.0
TkAUNG051920PF05531NPV_P1035553.58.9
TkAUNG051920PF12352V-SNARE_C37541.6e-0525.8
TkAUNG051920PF29090PEA2_C381380.5710.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LRP1Arabidopsis thalianasp|Q9LRP1|NPS13_ARATH Novel plant SNARE 1384.400%Swiss-ProtHigh
Q9LNH6Arabidopsis thalianasp|Q9LNH6|NPS12_ARATH Novel plant SNARE 1280.500%Swiss-ProtHigh
Q944A9Arabidopsis thalianasp|Q944A9|NPS11_ARATH Novel plant SNARE 1166.500%Swiss-ProtHigh

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