TkAUNG048030 | RubberDandelionOmics

Gene overview

TkAUNG048030

Reference: TK1151 Chr: ChrUn Coordinates: 13333638-13334797 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1062 bp · TkAUNG048030|TK1151|cDNA

CCCATCGACGACTGCTGGCGGTGCGACCCCAACTGGCACCTCAACCGCCAACGTCTCGCCGATTGCGGCATTGGATTCGGCCAATATGCCTTAGGCGGCAAAGGCGGCCGTTATTACGTCGTCACTGACTCCTCCGACCACGACGCCGTCAACCCCCGTCCAGGCACTCTCCGGTGGGCTGTCATCCAAACTGAACCTCTATGGATCGTCTTCCCCACCAATATGCACATCCAACTCTCTCAAGAACTCATTTTCAACAG...

CDS

Download CDS FASTA

756 bp · TkAUNG048030|TK1151|CDS

CCCATCGACGACTGCTGGCGGTGCGACCCCAACTGGCACCTCAACCGCCAACGTCTCGCCGATTGCGGCATTGGATTCGGCCAATATGCCTTAGGCGGCAAAGGCGGCCGTTATTACGTCGTCACTGACTCCTCCGACCACGACGCCGTCAACCCCCGTCCAGGCACTCTCCGGTGGGCTGTCATCCAAACTGAACCTCTATGGATCGTCTTCCCCACCAATATGCACATCCAACTCTCTCAAGAACTCATTTTCAACAG...

Protein

Download Protein FASTA

251 aa · TkAUNG048030|TK1151|PROTEIN

PIDDCWRCDPNWHLNRQRLADCGIGFGQYALGGKGGRYYVVTDSSDHDAVNPRPGTLRWAVIQTEPLWIVFPTNMHIQLSQELIFNSFKTVDGRGANVHITGGGCITLQYITNVIIHNIHIHHCYPSGNTNVRSSPTHYGYRTKSDGDGISIFGARDLWIDHCSLSHCKDGLIDAVMGSTGITISNNFFSHHDEVMLLGHSDDYLPDSGMQVGNVRYRRQWKSDDQQSRKPVYCSGKSQCQGGDEEGGNGA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG048030`
TK1151 ID	TkAUNG048030
OH-1004 ID	LXL04_005113
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 84.462 / OH-1004 43.892 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG048030

Location ChrUn:13333638-13334797 (+)

Description Similar to At3g53190: Probable pectate lyase 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g53190`	Probable pectate lyase 12.	No verified direct reference in this release
`At4g13710`	Probable pectate lyase 15.	No verified direct reference in this release
`At1g67750`	Probable pectate lyase 5.	No verified direct reference in this release
`At5g63180`	Probable pectate lyase 22.	No verified direct reference in this release
`At3g24670`	Probable pectate lyase 10.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_005113 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009664 plant-type cell wall organization Biological Process

GO:0042547 cell wall modification involved in multidimensional cell growth Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0098552 side of membrane Cellular Component

GO:0030570 pectate lyase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G04680

ath:AT3G24670

ath:AT3G53190

ath:AT3G54920

ath:AT4G13710

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.467

Rank 1 · TkAUNG048030 · TK1151

Lysosome / Vacuole0.261

Rank 2 · TkAUNG048030 · TK1151

Cytoplasm0.178

Rank 3 · TkAUNG048030 · TK1151

Endoplasmic reticulum0.089

Rank 4 · TkAUNG048030 · TK1151

Cell membrane0.068

Rank 5 · TkAUNG048030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00544Pectate_lyase_483-204 aa

PF13229Beta_helix97-189 aa

PF05048NosD135-203 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG048030	`PF00544`	Pectate_lyase_4	83	204	3.5e-11	43.4
TkAUNG048030	`PF13229`	Beta_helix	97	189	7.7e-05	23.0
TkAUNG048030	`PF05048`	NosD	135	203	0.073	13.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SCP2`	Arabidopsis thaliana	sp\|Q9SCP2\|PLY12_ARATH Probable pectate lyase 12	85.400%	Swiss-Prot	High
`Q944R1`	Arabidopsis thaliana	sp\|Q944R1\|PLY15_ARATH Probable pectate lyase 15	70.300%	Swiss-Prot	High
`Q9FXD8`	Arabidopsis thaliana	sp\|Q9FXD8\|PLY5_ARATH Probable pectate lyase 5	68.900%	Swiss-Prot	High
`Q93Z25`	Arabidopsis thaliana	sp\|Q93Z25\|PLY22_ARATH Probable pectate lyase 22	69.300%	Swiss-Prot	High
`Q9LJ42`	Arabidopsis thaliana	sp\|Q9LJ42\|PLY10_ARATH Probable pectate lyase 10	70.800%	Swiss-Prot	High

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