TkAUNG039990 | RubberDandelionOmics

Gene overview

TkAUNG039990

Reference: TK1151 Chr: ChrUn Coordinates: 11190582-11192038 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

894 bp · TkAUNG039990|TK1151|cDNA

NNNNCATACACGTGTCTTCCACTTGCTTACACCACGAGGCAAACCGCTGGTGCAATTCTGCAAGATGTTGCTGATACAGGTGTCCTTTTTTCAATATTGATGTGTAAAAATAAGGTTGTGAGTCTGGTAGGGTTGCAGAAAACATCACTTCATCCTGATGACATGTTACTTCTTGCTAACTTTGTCATGTCATCCGAATCCTTTAGGACATCTGAATCTTTTTCACCAATATGTTTGCCAAGATACAACCCCATGGCATT...

CDS

Download CDS FASTA

894 bp · TkAUNG039990|TK1151|CDS

NNNNCATACACGTGTCTTCCACTTGCTTACACCACGAGGCAAACCGCTGGTGCAATTCTGCAAGATGTTGCTGATACAGGTGTCCTTTTTTCAATATTGATGTGTAAAAATAAGGTTGTGAGTCTGGTAGGGTTGCAGAAAACATCACTTCATCCTGATGACATGTTACTTCTTGCTAACTTTGTCATGTCATCCGAATCCTTTAGGACATCTGAATCTTTTTCACCAATATGTTTGCCAAGATACAACCCCATGGCATT...

Protein

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297 aa · TkAUNG039990|TK1151|PROTEIN

XXYTCLPLAYTTRQTAGAILQDVADTGVLFSILMCKNKVVSLVGLQKTSLHPDDMLLLANFVMSSESFRTSESFSPICLPRYNPMAFLYAYVHYLDADTYLTLLTTSSQAFFHLKECRIQIEAVLAKSNVLNEVQRSLSEGGMRIEDLPVDPSSPNNSGSLFHLNHRKPATNGTVTGVGGPAGLWHFIYRSIYLDQYVSSEFASPISHPHQQKRLYRAYERLYASMHDKGVGPHKTQFRRDENYVLLCWVTQDFELYAAF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG039990`
TK1151 ID	TkAUNG039990
OH-1004 ID	LXL04_033057
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	90.700
Protein coverage (%)	TK1151 99.327 / OH-1004 47.403 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG039990

Location ChrUn:11190582-11192038 (+)

Description Similar to MON1: Vacuolar fusion protein MON1 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g28390`	Plays an important role in membrane trafficking through the secretory apparatus.	Activation of the Rab7 GTPase by the MON1-CCZ1 Complex Is Essential for PVC-to-Vacuole Trafficking and Plant Growth in Arabidopsis.2014 · DOI: 10.1105/tpc.114.123141

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0976000`	Plays an important role in membrane trafficking through the secretory apparatus.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033057 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006623 protein targeting to vacuole Biological Process

GO:0006879 intracellular iron ion homeostasis Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0007033 vacuole organization Biological Process

GO:0009306 protein secretion Biological Process

GO:0015031 protein transport Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0019085 early viral transcription Biological Process

GO:0019086 late viral transcription Biological Process

GO:0045324 late endosome to vacuole transport Biological Process

GO:0099402 plant organ development Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT2G28390

dosa:Os01g0976000

mcf:102126726

mmu:270096

mmu:72825

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

No direct LocPro prediction is available for this gene yet; these rows are supplementary Swiss-Prot homology annotations, not species-specific experimental localization.

Gene ID	Location	Swiss-Prot	Identity	Evidence
`TkAUNG039990`	Endosome . Prevacuolar compartment	`Q9SKN1`	66.981%	Localization annotation of homologous proteins

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19037Fuz_longin_227-120 aa

PF03308MeaB127-162 aa

PF19037Fuz_longin_2174-195 aa

PF19038Fuz_longin_3183-283 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG039990	`PF19037`	Fuz_longin_2	27	120	6.2e-22	78.4
TkAUNG039990	`PF03308`	MeaB	127	162	0.06	13.0
TkAUNG039990	`PF19037`	Fuz_longin_2	174	195	6.2e-22	78.4
TkAUNG039990	`PF19038`	Fuz_longin_3	183	283	8.4e-21	75.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SKN1`	Arabidopsis thaliana	sp\|Q9SKN1\|MON1_ARATH Vacuolar fusion protein MON1 homolog	69.200%	Swiss-Prot	High
`Q5JL08`	Oryza sativa subsp. japonica	sp\|Q5JL08\|MON1_ORYSJ Vacuolar fusion protein MON1 homolog	67.800%	Swiss-Prot	High

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