TkAUNG039180 | RubberDandelionOmics

Gene overview

TkAUNG039180

Reference: TK1151 Chr: ChrUn Coordinates: 10913302-10914114 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

813 bp · TkAUNG039180|TK1151|cDNA

ATGGAGGAGTCTCTCACCGATCTTCCTCCGAACATCCTCTCACAGATCCTTGCCAGGCTCCCCATCAAGAGCCTGTTGGTATGCAGATCTGTTTGTAAGACCTTTCTTGATATAACATCCTCCAACCCACATTTCAACTCTTTGCACTCTACAAACACAGCCCAAATTCTCATAGTCCAATTGGGAAATGTTTTTGAGCCATCAGGGATAGTGCAATTGGTGGACTCCGAGCTTGATACTGTTTCTGGGTTTGGTGAGGA...

CDS

Download CDS FASTA

813 bp · TkAUNG039180|TK1151|CDS

ATGGAGGAGTCTCTCACCGATCTTCCTCCGAACATCCTCTCACAGATCCTTGCCAGGCTCCCCATCAAGAGCCTGTTGGTATGCAGATCTGTTTGTAAGACCTTTCTTGATATAACATCCTCCAACCCACATTTCAACTCTTTGCACTCTACAAACACAGCCCAAATTCTCATAGTCCAATTGGGAAATGTTTTTGAGCCATCAGGGATAGTGCAATTGGTGGACTCCGAGCTTGATACTGTTTCTGGGTTTGGTGAGGA...

Protein

Download Protein FASTA

270 aa · TkAUNG039180|TK1151|PROTEIN

MEESLTDLPPNILSQILARLPIKSLLVCRSVCKTFLDITSSNPHFNSLHSTNTAQILIVQLGNVFEPSGIVQLVDSELDTVSGFGEEMALKPMFQIPTYPGRYFEKYCVYIGDENYFTLVNSCNGLLYFAERNLCERSFICNPITNEYATLLEFDEERNEQQLTMGLWFGFSPGENKYKILRIFSTVTGKPWERGFRQDFWAQVHTVGSCLWRDMNKQPPSEYLTWDSRSAQLNGIVHWLCRCEERSKFMIFFDFQKENF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG039180`
TK1151 ID	TkAUNG039180
OH-1004 ID	LXL04_017647
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	29.900
Protein coverage (%)	TK1151 94.074 / OH-1004 63.802 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG039180

Location ChrUn:10913302-10914114 (-)

Description Similar to At3g07870: F-box protein At3g07870

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10240`	Putative F-box protein At3g10240.	No verified direct reference in this release
`At3g06240`	F-box/kelch-repeat protein At3g06240.	No verified direct reference in this release
`At3g20690`	F-box protein At3g20690.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017647 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0008284 positive regulation of cell population proliferation Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0042177 negative regulation of protein catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT3G06240

ath:AT3G07870

ath:AT3G17540

ath:AT3G23880

ath:AT4G12560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.625

Rank 1 · TkAUNG039180 · TK1151

Nucleus0.421

Rank 2 · TkAUNG039180 · TK1151

Cell membrane0.094

Rank 3 · TkAUNG039180 · TK1151

Endoplasmic reticulum0.084

Rank 4 · TkAUNG039180 · TK1151

Lysosome / Vacuole0.040

Rank 5 · TkAUNG039180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box5-42 aa

PF12937F-box-like6-42 aa

PF24750b-prop_At3g26010-like96-258 aa

PF08268FBA_3112-260 aa

PF07734FBA_1118-263 aa

PF10546P63C190-221 aa

PF12937F-box-like210-216 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG039180	`PF00646`	F-box	5	42	1.6e-09	38.0
TkAUNG039180	`PF12937`	F-box-like	6	42	1.1e-07	32.3
TkAUNG039180	`PF24750`	b-prop_At3g26010-like	96	258	0.00023	21.1
TkAUNG039180	`PF08268`	FBA_3	112	260	1e-14	55.0
TkAUNG039180	`PF07734`	FBA_1	118	263	1.8e-16	60.8
TkAUNG039180	`PF10546`	P63C	190	221	0.13	13.6
TkAUNG039180	`PF12937`	F-box-like	210	216	1.1e-07	32.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SS35`	Arabidopsis thaliana	sp\|Q9SS35\|FB137_ARATH Putative F-box protein At3g10240	23.600%	Swiss-Prot	Low
`Q8GXC7`	Arabidopsis thaliana	sp\|Q8GXC7\|FBK50_ARATH F-box/kelch-repeat protein At3g06240	25.300%	Swiss-Prot	Low
`Q1PEN8`	Arabidopsis thaliana	sp\|Q1PEN8\|FB168_ARATH F-box protein At3g20690	22.200%	Swiss-Prot	Low

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