TkAUNG030540 | RubberDandelionOmics

Gene overview

TkAUNG030540

Reference: TK1151 Chr: ChrUn Coordinates: 8223705-8231005 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1293 bp · TkAUNG030540|TK1151|cDNA

ATGGCAGACAACACTGAAGCTGAGTTATCTGGAGACGCAGACGTACCAATAACCCCTTCTATCCCTTCCGGCACCGACACCGTTTGGGTTGATGCTTCTTCTCTCCTTCTGCTCGCCTGCCGCGATCTTCGAAATGATGAGCTCATAAATGGGGAGAATTTTAATCTTTTCGCTGCCATGTCTGCTTTAGAGATAATGGACCCAAAGATGGATTCAGGTATTGTATCTACGTATTATTCTGTTGATGAAGCCATTGAGAA...

CDS

Download CDS FASTA

1293 bp · TkAUNG030540|TK1151|CDS

ATGGCAGACAACACTGAAGCTGAGTTATCTGGAGACGCAGACGTACCAATAACCCCTTCTATCCCTTCCGGCACCGACACCGTTTGGGTTGATGCTTCTTCTCTCCTTCTGCTCGCCTGCCGCGATCTTCGAAATGATGAGCTCATAAATGGGGAGAATTTTAATCTTTTCGCTGCCATGTCTGCTTTAGAGATAATGGACCCAAAGATGGATTCAGGTATTGTATCTACGTATTATTCTGTTGATGAAGCCATTGAGAA...

Protein

Download Protein FASTA

430 aa · TkAUNG030540|TK1151|PROTEIN

MADNTEAELSGDADVPITPSIPSGTDTVWVDASSLLLLACRDLRNDELINGENFNLFAAMSALEIMDPKMDSGIVSTYYSVDEAIENGAAPIPLSFDRTTDIHRVIDIMDHLLACEATWHKGGSLAQTVFSCIYLLRPERTSSHALLHSFCRVIRTTCNSVVSAVSDARTNEEEDLFTMAYGLPLKADGDEKCLSMLHAVEETLSRQLKACKAPLSKRRIVEDTEPLQTNLDLEEGFCKAVLCRLRFRKHFYHVLTCLRR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG030540`
TK1151 ID	TkAUNG030540
OH-1004 ID	LXL04_018208
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	73.300
Protein coverage (%)	TK1151 83.488 / OH-1004 47.849 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkAUNG030540`
Location	ChrUn:8223705-8231005 (+)
Description	Similar to Naa35: N-alpha-acetyltransferase 35, NatC auxiliary subunit
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018208` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0008284 positive regulation of cell population proliferation Biological Process GO:0032006 regulation of TOR signaling Biological Process GO:0048659 smooth muscle cell proliferation Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0031417 NatC complex Cellular Component
KEGG gene cross-reference	dre:321587 mmu:78689 rno:64472 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.710

Rank 1 · TkAUNG030540 · TK1151

Cytoplasm0.255

Rank 2 · TkAUNG030540 · TK1151

Cell membrane0.082

Rank 3 · TkAUNG030540 · TK1151

Endoplasmic reticulum0.060

Rank 4 · TkAUNG030540 · TK1151

Golgi apparatus0.043

Rank 5 · TkAUNG030540 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04112Mak1046-188 aa

PF04112Mak10284-308 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG030540	`PF04112`	Mak10	46	188	1.4e-29	103.4
TkAUNG030540	`PF04112`	Mak10	284	308	1.4e-29	103.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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