TkAUNG028000 | RubberDandelionOmics

Gene overview

TkAUNG028000

Reference: TK1151 Chr: ChrUn Coordinates: 7529729-7533357 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

756 bp · TkAUNG028000|TK1151|cDNA

ATGGTGGTGGCGGCTAAAGACGAACCCAAACGACATATGGAGCAGATTCATTGGCGGATCCACAATTTGGAAGACAAACCTCCTGATTATCTCGCCAACAAGGCTTTCCCGGGGATTTGGTGCAACATTGTGAACTATCTAAAAGATCTCAGAAAGTGGCGAAGCGGGATTAATGGAGATGGAAAATTCACGGTAGCAGCTCTTAGATCGTTGGTAGAAAACAAGCCAAACGATGACAACACTTCCGCGGCGATCGTTAA...

CDS

Download CDS FASTA

756 bp · TkAUNG028000|TK1151|CDS

ATGGTGGTGGCGGCTAAAGACGAACCCAAACGACATATGGAGCAGATTCATTGGCGGATCCACAATTTGGAAGACAAACCTCCTGATTATCTCGCCAACAAGGCTTTCCCGGGGATTTGGTGCAACATTGTGAACTATCTAAAAGATCTCAGAAAGTGGCGAAGCGGGATTAATGGAGATGGAAAATTCACGGTAGCAGCTCTTAGATCGTTGGTAGAAAACAAGCCAAACGATGACAACACTTCCGCGGCGATCGTTAA...

Protein

Download Protein FASTA

251 aa · TkAUNG028000|TK1151|PROTEIN

MVVAAKDEPKRHMEQIHWRIHNLEDKPPDYLANKAFPGIWCNIVNYLKDLRKWRSGINGDGKFTVAALRSLVENKPNDDNTSAAIVKWNKMVPIKVICFVWRAAMGKIASAEALMRRGISVHSSCGKSCSGDPEFVDHIMLHCPFAKNVWSWIWKWCGVEEQQFPSLNALLCFIETWGRNPKKRLMMTAICYGTCWILWKTRNDRMFNNRFSSASRITNDIISMVFLWFKHRGDLVDCNWQVWCIKPFGCL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG028000`
TK1151 ID	TkAUNG028000
OH-1004 ID	LXL04_017163
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	40.900
Protein coverage (%)	TK1151 92.430 / OH-1004 10.900 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkAUNG028000`
Location	ChrUn:7529729-7533357 (+)
Description	Similar to Retrovirus-related Pol polyprotein from transposon TNT 1-94
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_017163` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006508 proteolysis Biological Process GO:0015074 DNA integration Biological Process GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.385

Rank 1 · TkAUNG028000 · TK1151

Cell membrane0.291

Rank 2 · TkAUNG028000 · TK1151

Nucleus0.210

Rank 3 · TkAUNG028000 · TK1151

Golgi apparatus0.099

Rank 4 · TkAUNG028000 · TK1151

Endoplasmic reticulum0.099

Rank 5 · TkAUNG028000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25411DUF788842-86 aa

PF13966zf-RVT81-150 aa

PF25411DUF7888175-202 aa

PF13966zf-RVT196-202 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG028000	`PF25411`	DUF7888	42	86	0.023	15.0
TkAUNG028000	`PF13966`	zf-RVT	81	150	3.2e-16	60.5
TkAUNG028000	`PF25411`	DUF7888	175	202	0.023	15.0
TkAUNG028000	`PF13966`	zf-RVT	196	202	3.2e-16	60.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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