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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG026240
Reference: TK1151 Chr: ChrUn Coordinates: 7033070-7039707 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3978 bp · TkAUNG026240|TK1151|cDNA

ATCACAATACGTTATTTTTCCAAATTCCAAAGCGTGAGGGTGACGATATTTCATTTTGAGGTCTTGAACTTTGTATTGTATGGTCGGATGACAACAAAGGAAATCTTGAAACCTTATCAGACACACGTAATGTTATCATTTAATGAGAGGCATAGAATTAGCCACAAACACACAAACACCAAGCCTACACACACTCTTGGTTTCATCCCTTGCTCCTTTCCTCTACATCCACACCGCTAACCACACATACAAGTTCTTCT...

CDS

Download CDS FASTA

3105 bp · TkAUNG026240|TK1151|CDS

ATGGCTTCTTTTGCTTCCTTAGTGGGTTTGGGAAGTACCTGCACTTGTTCTCCCGGTCAATTGGAAGGCACCCGTTTATCAATTAGAAAAGTTTATTTCCCCAACAGTTATTGCAGTTTTCATAACCTATTGGTCGGAAAAAGGTGGAGGTATGTTTCGATTTGTAAATATTCCGTGACTACTGATTACATCGCTGATCAAGGCACTTCACTATCGCTCAATGCCACCAATAAAAGCAGCCAAGACGATTCTTCTGATCT...

Protein

Download Protein FASTA

1034 aa · TkAUNG026240|TK1151|PROTEIN

MASFASLVGLGSTCTCSPGQLEGTRLSIRKVYFPNSYCSFHNLLVGKRWRYVSICKYSVTTDYIADQGTSLSLNATNKSSQDDSSDLLLKPTRPILKPPEPKISQLSSNGSSRDNLNEQERNKMIESLDEVLEKAEKLETSKNSDIPNKKPSPSPSKIPLRTTNNSNPDSNRVNSAIGKSKTLKSVWRKGNPVANIEKVVKEAPKIDKVPEKSTTEEVKSQQPISQSQPPQRFQPQLQAKPFTPPPVKRPVILKDLGAAP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG026240
TK1151 IDTkAUNG026240
OH-1004 IDLXL04_037894
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)95.900
Protein coverage (%)TK1151 96.228 / OH-1004 95.468
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG026240
LocationChrUn:7033070-7039707 (-)
DescriptionSimilar to At1g17220: Translation initiation factor IF-2, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g17220 One of the essential components for the initiation of protein synthesis. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037894 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006413 translational initiation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0003743 translation initiation factor activity Molecular Function
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ana:alr3832
ath:AT1G17220
ava:Ava_1867
ter:Tery_3976
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.973
Rank 1 · TkAUNG026240 · TK1151
Mitochondrion0.026
Rank 2 · TkAUNG026240 · TK1151
Nucleus0.025
Rank 3 · TkAUNG026240 · TK1151
Cytoplasm0.020
Rank 4 · TkAUNG026240 · TK1151
Cell membrane0.017
Rank 5 · TkAUNG026240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02216B114-135 aa
PF18798LPD3117-143 aa
PF18798LPD3190-220 aa
PF04760IF2_N399-447 aa
PF03193RsgA_GTPase473-503 aa
PF00009GTP_EFTU481-642 aa
PF01926MMR_HSR1482-590 aa
PF00071Ras482-641 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG026240PF02216B1141350.0514.3
TkAUNG026240PF18798LPD31171430.2912.1
TkAUNG026240PF18798LPD31902200.2912.1
TkAUNG026240PF04760IF2_N3994477.3e-0626.4
TkAUNG026240PF03193RsgA_GTPase4735030.01116.3
TkAUNG026240PF00009GTP_EFTU4816421e-31110.7
TkAUNG026240PF01926MMR_HSR14825903.1e-0834.4
TkAUNG026240PF00071Ras4826418.5e-0522.9
TkAUNG026240PF10662PduV-EutP4836130.03714.6
TkAUNG026240PF03193RsgA_GTPase5546130.01116.3
TkAUNG026240PF11987IF-25816132e-32112.3
TkAUNG026240PF02216B6676850.0514.3
TkAUNG026240PF22042EF-G_D26857633.1e-2898.4
TkAUNG026240PF03144GTP_EFTU_D26997303e-0731.5
TkAUNG026240PF14578GTP_EFTU_D47057390.4711.1
TkAUNG026240PF11987IF-28139062e-32112.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SHI1Arabidopsis thalianasp|Q9SHI1|IF2C_ARATH Translation initiation factor IF-2, chloroplastic62.500%Swiss-ProtHigh

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