TkAUNG024150 | RubberDandelionOmics

Gene overview

TkAUNG024150

Reference: TK1151 Chr: ChrUn Coordinates: 6467746-6471264 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1794 bp · TkAUNG024150|TK1151|cDNA

CGAACACTTTTAAAAAGTTCATGGGTAAATGGGGCACAAAAAAAAGTTTAAGGACTAAACGGGCACAAATATGAAAGTTAATTACGCCCTTGTATCTAAAACAAATTGTGCAAGTTGACATTGTAAACTTCATCTTGTGTTTACACTTCCTCTCTCTCACCACTTTCTGTATATATATATAGCTGCGTATTTATAGAGTATATGCTGATTAAGATTATACAGAATGGATTGGAGGTGTAGCATCACATGGAGGTCAACCT...

CDS

Download CDS FASTA

1263 bp · TkAUNG024150|TK1151|CDS

ATGGTTGCTCCTCCATTATTGTGCACCGCACCTATCAAGTTCCAGTTTGCAAATTATAGTAGCCCTAACTACAAAGACACAGGAAAAGCGTCGTTGAAGTTTAGATTGATCAACCAAAGATCTGACTTCTCTTTTGCATTGTTCAGCGGTGGATTATCCAGGCCAAAACTTGTTGCAGTGTCGAATTCAGTTGCTTTTGCATATCCAGATGCCCCAAATTACCCTCGATTAGCTCAAGGAAAGATGTGGAATGAAATGAC...

Protein

Download Protein FASTA

420 aa · TkAUNG024150|TK1151|PROTEIN

MVAPPLLCTAPIKFQFANYSSPNYKDTGKASLKFRLINQRSDFSFALFSGGLSRPKLVAVSNSVAFAYPDAPNYPRLAQGKMWNEMTVTWTSGYGINEAEPFVEWGRIGEETRRSPAGTLTIDRNSLCGAPARTVGWRDPGFIHTGFLHELWPNSVYMYKLGHKLLNGTFVYSPVYQFKSSPYPGQDSLQRVIIFGDMGKDEADGSNDYNNYQHGSLNTTKQLIKDLKNYDIVFHIGDICYANGYLSQWDQFTAQIEPIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG024150`
TK1151 ID	TkAUNG024150
OH-1004 ID	LXL04_025115
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 98.571 / OH-1004 33.879 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG024150

Location ChrUn:6467746-6471264 (-)

Description Similar to PAP1: Probable inactive purple acid phosphatase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13750`	Probable inactive purple acid phosphatase 1.	No verified direct reference in this release
`At5g50400`	Probable inactive purple acid phosphatase 27.	No verified direct reference in this release
`At4g24890`	Probable inactive purple acid phosphatase 24.	No verified direct reference in this release
`At3g07130`	Acid phosphatase activity with p-nitrophenyl phosphate (pNPP), D-myoinositol 1-phosphate (Ins(1)P1), phytic acid and Myo- inositol hexakisphosphate.	An Arabidopsis purple acid phosphatase with phytase activity increases foliar ascorbate.2008 · DOI: 10.1104/pp.107.109934

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025115 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0003993 acid phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G13750

ath:AT4G24890

ath:AT5G50400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.422

Rank 1 · TkAUNG024150 · TK1151

Lysosome / Vacuole0.212

Rank 2 · TkAUNG024150 · TK1151

Cell membrane0.152

Rank 3 · TkAUNG024150 · TK1151

Cytoplasm0.139

Rank 4 · TkAUNG024150 · TK1151

Endoplasmic reticulum0.096

Rank 5 · TkAUNG024150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17808fn3_PAP3-67 aa

PF00149Metallophos42-92 aa

PF16656Pur_ac_phosph_N73-179 aa

PF00149Metallophos191-406 aa

PF09423PhoD211-244 aa

PF12850Metallophos_2214-407 aa

PF16656Pur_ac_phosph_N256-288 aa

PF09423PhoD334-393 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG024150	`PF17808`	fn3_PAP	3	67	3.4e-24	85.9
TkAUNG024150	`PF00149`	Metallophos	42	92	7.4e-18	66.4
TkAUNG024150	`PF16656`	Pur_ac_phosph_N	73	179	5.1e-11	43.7
TkAUNG024150	`PF00149`	Metallophos	191	406	7.4e-18	66.4
TkAUNG024150	`PF09423`	PhoD	211	244	0.12	12.1
TkAUNG024150	`PF12850`	Metallophos_2	214	407	0.00056	20.7
TkAUNG024150	`PF16656`	Pur_ac_phosph_N	256	288	5.1e-11	43.7
TkAUNG024150	`PF09423`	PhoD	334	393	0.12	12.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LMX4`	Arabidopsis thaliana	sp\|Q9LMX4\|PPA1_ARATH Probable inactive purple acid phosphatase 1	78.300%	Swiss-Prot	High
`Q5MAU8`	Arabidopsis thaliana	sp\|Q5MAU8\|PPA27_ARATH Probable inactive purple acid phosphatase 27	75.900%	Swiss-Prot	High
`Q8H1R2`	Arabidopsis thaliana	sp\|Q8H1R2\|PPA24_ARATH Probable inactive purple acid phosphatase 24	71.200%	Swiss-Prot	High
`Q9SFU3`	Arabidopsis thaliana	sp\|Q9SFU3\|PPA15_ARATH Purple acid phosphatase 15	25.900%	Swiss-Prot	Low

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