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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG024000
Reference: TK1151 Chr: ChrUn Coordinates: 6440031-6442088 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1482 bp · TkAUNG024000|TK1151|cDNA

TTAAAAACGATAAAAAAGAAGGAGACGACTGTGTTTTGTTGGCCTATCAAGTATCGAGAACTCGTCACACTCTTCCCATCCCACCTTTGGAAGTTTCAAGATGGCGGAGATGTCAACGGAGACAACCGCGCCGTTACTCAGGCCACGGCAGGCTGCCGGAGAATCACAATCAGGGGAAGGTGGCAGGCCGACTACGCTCGCTCTTCTTCTGGGCCGTGCTTCGGGACGGCGTGGAGCGTCTATGCTGGTGCGCGAGACTG...

CDS

Download CDS FASTA

1068 bp · TkAUNG024000|TK1151|CDS

ATGGCGGAGATGTCAACGGAGACAACCGCGCCGTTACTCAGGCCACGGCAGGCTGCCGGAGAATCACAATCAGGGGAAGGTGGCAGGCCGACTACGCTCGCTCTTCTTCTGGGCCGTGCTTCGGGACGGCGTGGAGCGTCTATGCTGGTGCGCGAGACTGCAGCGCGACAACTGGAGGAGAGGCGAGCCGACTGGGGCTACTCGAAACCAGTTGTTGCCCTAGACATGACATGGAACCTCGCCTTCGTAGCGGTTTCGGT...

Protein

Download Protein FASTA

355 aa · TkAUNG024000|TK1151|PROTEIN

MAEMSTETTAPLLRPRQAAGESQSGEGGRPTTLALLLGRASGRRGASMLVRETAARQLEERRADWGYSKPVVALDMTWNLAFVAVSVVLLICTLEEKPNVPIRVWICGYALQCAVHAVLVWLEYSRRSRRLHEEETTGGSESNYNDSEDDDGRIGAFLTSNTISYTKRCENLNTMVSFVWWLIGFYWMVSGGEILLHNAPRLYWLTVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLNILP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG024000
TK1151 IDTkAUNG024000
OH-1004 IDLXL04_025102
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG024000
LocationChrUn:6440031-6442088 (-)
DescriptionSimilar to RIE1: E3 ubiquitin protein ligase RIE1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g01735 Probable E3 ubiquitin-protein ligase required for embryo development.
A RING-H2 zinc-finger protein gene RIE1 is essential for seed development in Arabidopsis.2003 · DOI: 10.1023/b:plan.0000009256.01620.a6
At4g11680 Mediates E2-dependent protein ubiquitination in vitro. No verified direct reference in this release
At1g12760 Mediates E2-dependent protein ubiquitination in vitro. No verified direct reference in this release
At1g63170 Mediates E2-dependent protein ubiquitination. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0488800 Possesses E3 ubiqutin-protein ligase activity in vitro.
Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.2016 · DOI: 10.1111/ppl.12459
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025102 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G12760
ath:AT1G63170
ath:AT2G01735
ath:AT4G11680
dre:767686
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.311
Rank 1 · TkAUNG024000 · TK1151
Cell membrane0.240
Rank 2 · TkAUNG024000 · TK1151
Cytoplasm0.234
Rank 3 · TkAUNG024000 · TK1151
Endoplasmic reticulum0.233
Rank 4 · TkAUNG024000 · TK1151
Golgi apparatus0.213
Rank 5 · TkAUNG024000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19144DUF58265-15 aa
PF13639zf-RING_291-110 aa
PF17123zf-RING_1191-107 aa
PF12861zf-ANAPC11114-125 aa
PF07402Herpes_U26169-240 aa
PF19144DUF5826211-226 aa
PF00097zf-C3HC4233-242 aa
PF13920zf-C3HC4_3301-348 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG024000PF19144DUF58265151.210.0
TkAUNG024000PF13639zf-RING_2911108.5e-1555.5
TkAUNG024000PF17123zf-RING_11911072.6e-0834.1
TkAUNG024000PF12861zf-ANAPC111141250.03714.8
TkAUNG024000PF07402Herpes_U261692400.0713.4
TkAUNG024000PF19144DUF58262112261.210.0
TkAUNG024000PF00097zf-C3HC42332424e-0627.3
TkAUNG024000PF13920zf-C3HC4_33013480.002718.2
TkAUNG024000PF11793FANCL_C3023400.5411.3
TkAUNG024000PF13639zf-RING_23033458.5e-1555.5
TkAUNG024000PF17123zf-RING_113033312.6e-0834.1
TkAUNG024000PF12678zf-rbx13033454.2e-0834.0
TkAUNG024000PF11789zf-Nse3033440.6210.7
TkAUNG024000PF13923zf-C3HC4_23043449.9e-0729.2
TkAUNG024000PF00097zf-C3HC43043444e-0627.3
TkAUNG024000PF13445zf-RING_UBOX3043420.0003921.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GUU2Arabidopsis thalianasp|Q8GUU2|RIE1_ARATH E3 ubiquitin protein ligase RIE163.900%Swiss-ProtHigh
Q93Z92Arabidopsis thalianasp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g1168052.900%Swiss-ProtHigh
Q9LN71Arabidopsis thalianasp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g1276051.000%Swiss-ProtHigh
Q8LDB8Arabidopsis thalianasp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g6317048.400%Swiss-ProtMedium
Q6AVN2Oryza sativa subsp. japonicasp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP127.800%Swiss-ProtLow

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