TkAUNG022560 | RubberDandelionOmics

Gene overview

TkAUNG022560

Reference: TK1151 Chr: ChrUn Coordinates: 6006583-6014961 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2630 bp · TkAUNG022560|TK1151|cDNA

CAAGGACCTAACTTGTAGTTTACTCTATCTATATTTTGTGAGAGGTAAATTCGAAACGCCGTCGTGTCAGGTCTCTTCCACAACTACCCCCAAATCATCTCAAATAATTTTCCCCGGAACCCAGAAGGCCGAATTGCGACCTCGCCGACGTTTCTCTCTCATCCGCTTTCTTTTCCGCCAAGCAAAACCCCATTCATCAGTTTCACACATACACACATAAAGCCCAATCAATTCCAAGTCATCGTCTATCTAACGTCGCT...

CDS

Download CDS FASTA

1554 bp · TkAUNG022560|TK1151|CDS

ATGGCATCAAGATATGTCAAAGTATCAGACAACAACAGCATTGGAAGCCGTGTCATTGTCAGTTCAAGAAAGAAACGCGTATCTCAAATACTTAGAGCCAGTTACAAGGCGCCAAGTGTCACACCCACATCACTATCCAAGAAGACTCTAAAAAGAAAGAGAGACAATGATAACTCCAAATCATCCACCTGTTACTCTTCTTCCAGCAAAAACCTACTAAAAAACTACTCAAATTTCATGAAAAGTGGACTCCCACAACG...

Protein

Download Protein FASTA

517 aa · TkAUNG022560|TK1151|PROTEIN

MASRYVKVSDNNSIGSRVIVSSRKKRVSQILRASYKAPSVTPTSLSKKTLKRKRDNDNSKSSTCYSSSSKNLLKNYSNFMKSGLPQRLLFSEDNQWNDFSQDVIELVREHFLAKTSAFEVKFNGRHLMLDVLRMNELDLKTGARKPIAWIDEKGSCFFPENNNSCHQETREIDPEIKLHVEIELNDNNSFEECVEESNVKRVKVDQESQTSIDEESVRNMFMKGVSQGQSQTLKADIVEVKKCSGGVMESKLDLFNAQVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG022560`
TK1151 ID	TkAUNG022560
OH-1004 ID	LXL04_026115
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	99.800
Protein coverage (%)	TK1151 100.000 / OH-1004 96.462 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG022560

Location ChrUn:6006583-6014961 (-)

Description Similar to RCD1: Inactive poly [ADP-ribose] polymerase RCD1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32230`	Inactive ADP-ribosyltransferase that functions with SRO1 to regulate oxidative stress, hormonal and developmental responses.	CEO1, a new protein from Arabidopsis thaliana, protects yeast against oxidative damage.2000 · DOI: 10.1016/s0014-5793(00)02016-0 Ozone-sensitive arabidopsis rcd1 mutant reveals opposite roles for ethylene and jasmonate signaling pathways in regulating superoxide-dependent cell death.2000 · DOI: 10.1105/tpc.12.10.1849 A methyl viologen-resistant mutant of Arabidopsis, which is allelic to ozone-sensitive rcd1, is tolerant to supplemental ultraviolet-B irradiation.2004 · DOI: 10.1104/pp.103.033480 Arabidopsis RADICAL-INDUCED CELL DEATH1 belongs to the WWE protein-protein interaction domain protein family and modulates abscisic acid, ethylene, and methyl jasmonate responses.2004 · DOI: 10.1105/tpc.021832 Ozone-induced programmed cell death in the Arabidopsis radical-induced cell death1 mutant.2005 · DOI: 10.1104/pp.104.055681 Overexpression of the RADICAL-INDUCED CELL DEATH1 (RCD1) gene of Arabidopsis causes weak rcd1 phenotype with compromised oxidative-stress responses.2006 · DOI: 10.1271/bbb.50673 Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.2009 · DOI: 10.1111/j.1365-313x.2009.03951.x The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis development.2009 · DOI: 10.1104/pp.109.142786 RCD1 and SRO1 are necessary to maintain meristematic fate in Arabidopsis thaliana.2011 · DOI: 10.1093/jxb/erq363
`At2g35510`	Probable inactive ADP-ribosyltransferase that functions with RCD1 to regulate oxidative stress, hormonal and developmental responses.	Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors.2009 · DOI: 10.1111/j.1365-313x.2009.03951.x The paralogous genes RADICAL-INDUCED CELL DEATH1 and SIMILAR TO RCD ONE1 have partially redundant functions during Arabidopsis development.2009 · DOI: 10.1104/pp.109.142786 RCD1 and SRO1 are necessary to maintain meristematic fate in Arabidopsis thaliana.2011 · DOI: 10.1093/jxb/erq363

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_026115 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000303 response to superoxide Biological Process

GO:0006809 nitric oxide biosynthetic process Biological Process

GO:0006970 response to osmotic stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009723 response to ethylene Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009867 jasmonic acid mediated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010102 lateral root morphogenesis Biological Process

GO:0010193 response to ozone Biological Process

KEGG gene cross-reference

ath:AT1G23550

ath:AT1G32230

ath:AT1G70440

ath:AT2G35510

ath:AT5G62520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.941

Rank 1 · TkAUNG022560 · TK1151

Cytoplasm0.111

Rank 2 · TkAUNG022560 · TK1151

Cell membrane0.032

Rank 3 · TkAUNG022560 · TK1151

Endoplasmic reticulum0.019

Rank 4 · TkAUNG022560 · TK1151

Plastid0.016

Rank 5 · TkAUNG022560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04001Vhr125-42 aa

PF30011EXP146-113 aa

PF23467WWE_579-158 aa

PF04001Vhr186-122 aa

PF02825WWE92-148 aa

PF14544DUF4443139-186 aa

PF30011EXP1186-207 aa

PF14544DUF4443329-357 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG022560	`PF04001`	Vhr1	25	42	0.068	14.2
TkAUNG022560	`PF30011`	EXP1	46	113	0.18	12.8
TkAUNG022560	`PF23467`	WWE_5	79	158	8.3e-32	110.4
TkAUNG022560	`PF04001`	Vhr1	86	122	0.068	14.2
TkAUNG022560	`PF02825`	WWE	92	148	0.0026	18.8
TkAUNG022560	`PF14544`	DUF4443	139	186	0.24	12.1
TkAUNG022560	`PF30011`	EXP1	186	207	0.18	12.8
TkAUNG022560	`PF14544`	DUF4443	329	357	0.24	12.1
TkAUNG022560	`PF30011`	EXP1	416	442	0.18	12.8
TkAUNG022560	`PF12174`	RST	449	514	2.2e-26	92.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RY59`	Arabidopsis thaliana	sp\|Q8RY59\|RCD1_ARATH Inactive poly [ADP-ribose] polymerase RCD1	38.200%	Swiss-Prot	Medium
`O82289`	Arabidopsis thaliana	sp\|O82289\|SRO1_ARATH Probable inactive poly [ADP-ribose] polymerase SRO1	35.400%	Swiss-Prot	Medium

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