Gene Card
Gene overview
cDNA / CDS / Protein Sequences
4145 bp · TkAUNG019570|TK1151|cDNA
AACGAACCAAATAGGGTTTCTAACGTACAAATTGAAGACACAAACTTGTAAATTGGAATCCCTTTGGAAGCGAAATCTAAATACCGCCCTCTTTCTGGCATATTCACCAAGTCCTGTGGAGCAGCTGCGTCACCGAACAAATCTTCCCGTTCAAACTGTTTCATCTGCCAAGGAAACCGTAATCGAGTTTCAGGGAGGAACAATGATGCCGCCCGCCATCAATTTCATCAACACAGAAAAGGCAAAAAAGAGGTGGAGGA...
573 bp · TkAUNG019570|TK1151|CDS
ATGCAATCGCGATTCTCCAAGACATTGGAGCTTTATCCCCTTCTGAAGGAACTCACCGAACTCGGTTCCAAACTCGGTTCAATCCCGGTCCACCCACTAATAACCAGCAAGATGCTCCTATTTGCCATCTCAATGGACTGTGTTGACCCCGCGTTGACTTTAGCCTGTGCCATGGGGGACTACCGCGAGCCCTTCACCCTCCCATGCTCCATCCGACAAAAAAAAAGCCGACCTCGCCAAAATCCCAATTATCCGCCTTG...
Protein
Download Protein FASTA190 aa · TkAUNG019570|TK1151|PROTEIN
MQSRFSKTLELYPLLKELTELGSKLGSIPVHPLITSKMLLFAISMDCVDPALTLACAMGDYREPFTLPCSIRQKKSRPRQNPNYPPCTAAMRPAGNHRRLRMLENRQKTGPSLEVCSQYFLSGGVMKMLFGYAEAAWNELLRNGFVPEGSGTLNEEVAGSWGGDPAVACCGMYPRSGKLYPPDVKTRQGL
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkAUNG019570 |
|---|---|
| TK1151 ID | TkAUNG019570 |
| OH-1004 ID | LXL04_032818 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 28.100 |
| Protein coverage (%) | TK1151 83.684 / OH-1004 15.137Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkAUNG019570 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | ChrUn:5231594-5236793 (-) | |||||||||
| Description | Similar to At2g35920: DExH-box ATP-dependent RNA helicase DExH1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0001503 ossification Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0006359 regulation of transcription by RNA polymerase III Biological Process GO:0007283 spermatogenesis Biological Process GO:0010628 positive regulation of gene expression Biological Process GO:0017148 negative regulation of translation Biological Process GO:0030154 cell differentiation Biological Process GO:0031442 positive regulation of mRNA 3'-end processing Biological Process GO:0032206 positive regulation of telomere maintenance Biological Process GO:0034605 cellular response to heat Biological Process GO:0034644 cellular response to UV Biological Process GO:0043488 regulation of mRNA stability Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G48650 ath:AT2G01130 ath:AT2G35920 bta:509583 hsa:170506 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF21010HA2_C36-94 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkAUNG019570 | PF21010 | HA2_C | 36 | 94 | 1.3e-08 | 35.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.