TkAUNG018940 | RubberDandelionOmics

Gene overview

TkAUNG018940

Reference: TK1151 Chr: ChrUn Coordinates: 5044874-5045941 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

570 bp · TkAUNG018940|TK1151|cDNA

ATGGTCCGCGTTTTCCCGATTGCTTCCGCGTTTTGGGCTTGTTTCAGTTTTTTACCCGGCCCAAGTAATATAAACCCTAAAACCCTAATCCTAGTTCATCGGCCGTCACATTTCCAATCGGCGATTTCCGGCGATGTATTTTCCGGCCAGGCGATTTCCGGCGAAGTAATCCTAGTTGCTATTAAGCTAAATGCAGACAAAAGTCCTTTTCAGCGAACATATGCTATCCAGGTGGAATCTGCTTCTGCTTTAAGCTTTAA...

CDS

Download CDS FASTA

570 bp · TkAUNG018940|TK1151|CDS

ATGGTCCGCGTTTTCCCGATTGCTTCCGCGTTTTGGGCTTGTTTCAGTTTTTTACCCGGCCCAAGTAATATAAACCCTAAAACCCTAATCCTAGTTCATCGGCCGTCACATTTCCAATCGGCGATTTCCGGCGATGTATTTTCCGGCCAGGCGATTTCCGGCGAAGTAATCCTAGTTGCTATTAAGCTAAATGCAGACAAAAGTCCTTTTCAGCGAACATATGCTATCCAGGTGGAATCTGCTTCTGCTTTAAGCTTTAA...

Protein

Download Protein FASTA

189 aa · TkAUNG018940|TK1151|PROTEIN

MVRVFPIASAFWACFSFLPGPSNINPKTLILVHRPSHFQSAISGDVFSGQAISGEVILVAIKLNADKSPFQRTYAIQVESASALSFKKSKDVEKWHESCGLRFFKEQMSKADIAISSKPNILVDVHLDDVEARLGELESELIEINTNNEKLQRSYNEFRENISPENTSPEIVRPENTSLEIADWKCDGR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG018940`
TK1151 ID	TkAUNG018940
OH-1004 ID	LXL04_023954
Relationship / confidence	Rbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 86.697 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG018940

Location ChrUn:5044874-5045941 (+)

Description Similar to VHA-a3: V-type proton ATPase subunit a3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g39080`	Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes.	Arabidopsis V-ATPase activity at the tonoplast is required for efficient nutrient storage but not for sodium accumulation.2010 · DOI: 10.1073/pnas.0913035107
`At2g21410`	Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes.	Arabidopsis V-ATPase activity at the tonoplast is required for efficient nutrient storage but not for sodium accumulation.2010 · DOI: 10.1073/pnas.0913035107
`At2g28520`	Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes.	Reduced V-ATPase activity in the trans-Golgi network causes oxylipin-dependent hypocotyl growth Inhibition in Arabidopsis.2008 · DOI: 10.1105/tpc.108.058362

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023954 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006911 phagocytosis, engulfment Biological Process

GO:0007035 vacuolar acidification Biological Process

GO:0015986 proton motive force-driven ATP synthesis Biological Process

GO:0051453 regulation of intracellular pH Biological Process

GO:0070070 proton-transporting V-type ATPase complex assembly Biological Process

GO:1902600 proton transmembrane transport Biological Process

GO:2000012 regulation of auxin polar transport Biological Process

GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005764 lysosome Cellular Component

KEGG gene cross-reference

ath:AT2G21410

ath:AT2G28520

ath:AT4G39080

ddi:DDB_G0291858

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.410

Rank 1 · TkAUNG018940 · TK1151

Nucleus0.353

Rank 2 · TkAUNG018940 · TK1151

Mitochondrion0.128

Rank 3 · TkAUNG018940 · TK1151

Cell membrane0.117

Rank 4 · TkAUNG018940 · TK1151

Endoplasmic reticulum0.086

Rank 5 · TkAUNG018940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01496V_ATPase_I62-161 aa

PF11408Helicase_Sgs1105-162 aa

PF05377FlaC_arch127-162 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG018940	`PF01496`	V_ATPase_I	62	161	1.8e-05	23.7
TkAUNG018940	`PF11408`	Helicase_Sgs1	105	162	0.0024	18.6
TkAUNG018940	`PF05377`	FlaC_arch	127	162	0.1	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W4S4`	Arabidopsis thaliana	sp\|Q8W4S4\|VHAA3_ARATH V-type proton ATPase subunit a3	48.100%	Swiss-Prot	Medium
`Q9SJT7`	Arabidopsis thaliana	sp\|Q9SJT7\|VHAA2_ARATH V-type proton ATPase subunit a2	49.100%	Swiss-Prot	Medium
`Q8RWZ7`	Arabidopsis thaliana	sp\|Q8RWZ7\|VHAA1_ARATH V-type proton ATPase subunit a1	42.600%	Swiss-Prot	Medium

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