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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG018690
Reference: TK1151 Chr: ChrUn Coordinates: 4960960-4965584 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3239 bp · TkAUNG018690|TK1151|cDNA

GAGACTACCAACCAAAATCCAAAATCAGAATTGAAACTTTGAAAGCTTCCTGTTCGTGAGTCGTGACCTAGCAAACGACGCCTCCCGAGTCCCGATTCAACTCCCGTCGACCGCCGCACACACACGGCCAACTCCCGGCGCACACAGACGGCCAACTCCCGACGGTCGCTAGTCGCTACTGCCTACACACAGCCGGTCTTTTCCCTAGTCGCTAGTCGCTACACACAGCCGAGCCGCCTTTGAAACAAAGTTGATTTGGG...

CDS

Download CDS FASTA

2193 bp · TkAUNG018690|TK1151|CDS

ATGGGGAGTATTTTCAAAAGCCTTTCTGTTATAAAAAATCCAATAAAAAGCTTTGTTGGCTTCATTGAAGCAAACATTTCAGTCTTAAAACAGTGCACTAAACAGCGTTTGATCACAGAAGGCCAAGTTCTCCATGGCCATTTATACAAAATTGGCATTTCATCACATAGACATGTAGCAGTCAAACTACTCATCATGTATCTAGATTTCAGAAAATCAGCTGAAGTTGACCAATTACTTAAAGATTATGATGGATTCGA...

Protein

Download Protein FASTA

730 aa · TkAUNG018690|TK1151|PROTEIN

MGSIFKSLSVIKNPIKSFVGFIEANISVLKQCTKQRLITEGQVLHGHLYKIGISSHRHVAVKLLIMYLDFRKSAEVDQLLKDYDGFDMIVHNCLISANVDWGNVDEARRLFDEMPERNEVSWTALISGYLKYGRVDESMWLFQRNPFQNVISWTAAISGLLSNGMHFNSIHLFLEMLKSGVMPNNVTLVSIVRASTEMVDFTMGLTALSLSIKLGYEDDVSVCNSLITFSLRLGKLEMARLIFEKMGKRDVISWTAILDM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG018690
TK1151 IDTkAUNG018690
OH-1004 IDLXL04_023959
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)98.800
Protein coverage (%)TK1151 99.041 / OH-1004 76.759
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG018690
LocationChrUn:4960960-4965584 (-)
DescriptionSimilar to PCMP-H41: Pentatricopeptide repeat-containing protein At2g22070
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g50170 Chelates iron to the siroheme precursor.
Identification and characterization of the terminal enzyme of siroheme biosynthesis from Arabidopsis thaliana: a plastid-located sirohydrochlorin ferrochelatase containing a 2FE-2S center.2005 · DOI: 10.1074/jbc.m411360200
Characterization of the evolutionarily conserved iron-sulfur cluster of sirohydrochlorin ferrochelatase from Arabidopsis thaliana.2012 · DOI: 10.1042/bj20111993
At3g23330 Putative pentatricopeptide repeat-containing protein At3g23330. No verified direct reference in this release
At4g21300 Pentatricopeptide repeat-containing protein At4g21300. No verified direct reference in this release
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At3g02010 Putative pentatricopeptide repeat-containing protein At2g01510. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023959 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G13600
ath:AT2G22070
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.673
Rank 1 · TkAUNG018690 · TK1151
Plastid0.160
Rank 2 · TkAUNG018690 · TK1151
Nucleus0.048
Rank 3 · TkAUNG018690 · TK1151
Cytoplasm0.036
Rank 4 · TkAUNG018690 · TK1151
Cell membrane0.006
Rank 5 · TkAUNG018690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14536DUF444110-36 aa
PF22330Rib_mS39_PPR24-133 aa
PF00637Clathrin55-89 aa
PF13429TPR_1562-85 aa
PF23276TPR_2476-113 aa
PF17049AEP184-175 aa
PF13812PPR_386-116 aa
PF05843Suf86-145 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG018690PF14536DUF444110360.2112.5
TkAUNG018690PF22330Rib_mS39_PPR241332.5e-0937.9
TkAUNG018690PF00637Clathrin55890.004217.5
TkAUNG018690PF13429TPR_1562850.1212.5
TkAUNG018690PF23276TPR_24761134.2e-1453.3
TkAUNG018690PF17049AEP1841757.2e-0832.6
TkAUNG018690PF13812PPR_3861163.5e-31107.8
TkAUNG018690PF05843Suf861450.0005219.4
TkAUNG018690PF12854PPR_1871149.1e-44147.6
TkAUNG018690PF13041PPR_2891186.8e-80263.7
TkAUNG018690PF01535PPR901182.4e-82266.3
TkAUNG018690PF13428TPR_141021141.8e-0938.1
TkAUNG018690PF14559TPR_191021184.8e-0730.7
TkAUNG018690PF07719TPR_21021130.005717.4
TkAUNG018690PF07721TPR_41021130.01716.4
TkAUNG018690PF13374TPR_101021130.1412.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q84JH7Arabidopsis thalianasp|Q84JH7|SIRB_ARATH Sirohydrochlorin ferrochelatase, chloroplastic72.000%Swiss-ProtHigh
Q9LW63Arabidopsis thalianasp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g2333025.900%Swiss-ProtLow
Q9STE1Arabidopsis thalianasp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g2130028.300%Swiss-ProtLow
Q9SMZ2Arabidopsis thalianasp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g3317023.300%Swiss-ProtLow
Q9S7F4Arabidopsis thalianasp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g0151024.900%Swiss-ProtLow

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